Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33317 | 3' | -61 | NC_007605.1 | + | 142268 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141453 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141555 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141657 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141758 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141860 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141962 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142064 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142166 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141351 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141249 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141147 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 4414 | 0.7 | 0.484067 |
Target: 5'- gAGAUGGCCcugGCCGgGC--AGCGGGGAg -3' miRNA: 3'- gUCUGCCGG---CGGCgUGagUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 143083 | 0.7 | 0.500627 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGAu -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142676 | 0.69 | 0.560351 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcuccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG--------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 140638 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 140739 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 140841 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 140943 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141045 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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