miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 63231 1.08 0.001339
Target:  5'- cCAGACGGCCGCCGCACUCAGCGAGGAg -3'
miRNA:   3'- -GUCUGCCGGCGGCGUGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 117387 0.68 0.608118
Target:  5'- aCAGuGCGGCUcagGCUaCccugGCUCAGCGAGGAg -3'
miRNA:   3'- -GUC-UGCCGG---CGGcG----UGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 73637 0.7 0.492315
Target:  5'- aCGGACucaugcgGGCCuggGCCGgGCUCAGUGuGGAc -3'
miRNA:   3'- -GUCUG-------CCGG---CGGCgUGAGUCGCuCCU- -5'
33317 3' -61 NC_007605.1 + 75559 0.71 0.430903
Target:  5'- aGGugGGCCaGCUGCAC-CuuCGAGGAg -3'
miRNA:   3'- gUCugCCGG-CGGCGUGaGucGCUCCU- -5'
33317 3' -61 NC_007605.1 + 156350 0.72 0.373432
Target:  5'- gAGACcGCCGCCGCACUgcuUGGgGAGGc -3'
miRNA:   3'- gUCUGcCGGCGGCGUGA---GUCgCUCCu -5'
33317 3' -61 NC_007605.1 + 130745 0.73 0.314416
Target:  5'- -uGGgGGCUGCCaGC-CUCAGCGAGGu -3'
miRNA:   3'- guCUgCCGGCGG-CGuGAGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 4289 0.67 0.647436
Target:  5'- gAGGCGGacgaGCCGguCUCGGgGcAGGAg -3'
miRNA:   3'- gUCUGCCgg--CGGCguGAGUCgC-UCCU- -5'
33317 3' -61 NC_007605.1 + 75363 0.69 0.559385
Target:  5'- cCAGAgugcucCGGCUGCCGCAC-CAcGgGAGGc -3'
miRNA:   3'- -GUCU------GCCGGCGGCGUGaGU-CgCUCCu -5'
33317 3' -61 NC_007605.1 + 103281 0.72 0.373432
Target:  5'- aCAGacGCGGCUucuGCCGCaACUgCGGCGGGGGc -3'
miRNA:   3'- -GUC--UGCCGG---CGGCG-UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 135585 0.75 0.262731
Target:  5'- aAGAacUGGCCGCUuuGCGCUCugcGCGAGGAc -3'
miRNA:   3'- gUCU--GCCGGCGG--CGUGAGu--CGCUCCU- -5'
33317 3' -61 NC_007605.1 + 162985 0.78 0.1717
Target:  5'- gGGGCGGCCGCCaGUcccaugugcucGCUCuGCGAGGGc -3'
miRNA:   3'- gUCUGCCGGCGG-CG-----------UGAGuCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 74091 0.67 0.651365
Target:  5'- uCAGAgccUGGCCGCCGUcacgucccuggccgaGCUgGGgGAGGu -3'
miRNA:   3'- -GUCU---GCCGGCGGCG---------------UGAgUCgCUCCu -5'
33317 3' -61 NC_007605.1 + 54166 0.77 0.184628
Target:  5'- gAGAUGGCgGCaaGCACUCGGCGGGGc -3'
miRNA:   3'- gUCUGCCGgCGg-CGUGAGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 62618 0.7 0.4997
Target:  5'- -uGGCGGCCGCguaccggCGCAUcaucgaagagggCAGCGGGGAg -3'
miRNA:   3'- guCUGCCGGCG-------GCGUGa-----------GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 61987 0.66 0.705919
Target:  5'- gAGGCccuGGCCGCuCGUguGCaggaggCGGCGGGGAg -3'
miRNA:   3'- gUCUG---CCGGCG-GCG--UGa-----GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 112739 0.67 0.637605
Target:  5'- uCAGACGGCCG-CGCu----GCGAGGc -3'
miRNA:   3'- -GUCUGCCGGCgGCGugaguCGCUCCu -5'
33317 3' -61 NC_007605.1 + 141657 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141555 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141453 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141351 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.