Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33317 | 3' | -61 | NC_007605.1 | + | 142268 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142166 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142064 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141962 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141249 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141351 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141657 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141555 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142574 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142777 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39422 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39297 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39172 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141045 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 141147 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38548 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38423 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38298 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142981 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 142879 | 0.69 | 0.567123 |
Target: 5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3' miRNA: 3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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