miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 5' -53.2 NC_007605.1 + 149783 0.65 0.984399
Target:  5'- cUUCCUCAguggcucucccgucACCAGCCa--GGACGagugCCu -3'
miRNA:   3'- cAAGGAGU--------------UGGUCGGgugCUUGCa---GG- -5'
33317 5' -53.2 NC_007605.1 + 153783 0.66 0.983088
Target:  5'- -gUgCUCGACCugguGCUgGCGGAUGcCCg -3'
miRNA:   3'- caAgGAGUUGGu---CGGgUGCUUGCaGG- -5'
33317 5' -53.2 NC_007605.1 + 160053 0.66 0.981282
Target:  5'- -cUCCUCAGCCuccaacaggugcccgAGCCCcgccugGCGGACuucauucucaaacaGUCCc -3'
miRNA:   3'- caAGGAGUUGG---------------UCGGG------UGCUUG--------------CAGG- -5'
33317 5' -53.2 NC_007605.1 + 152559 0.66 0.981073
Target:  5'- cUUCCUCAGCggcaugacaAGCCUGCuGcuCGUCCu -3'
miRNA:   3'- cAAGGAGUUGg--------UCGGGUG-CuuGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 104864 0.66 0.981073
Target:  5'- --cCCggaGACUGGCCCcCGGGCGgcgCCg -3'
miRNA:   3'- caaGGag-UUGGUCGGGuGCUUGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 51479 0.66 0.978883
Target:  5'- --cCCUC--CCAGCCCACaGAGCccCCu -3'
miRNA:   3'- caaGGAGuuGGUCGGGUG-CUUGcaGG- -5'
33317 5' -53.2 NC_007605.1 + 116274 0.66 0.978883
Target:  5'- --gUCUUAACCAgGCCCugGAcuUGUUCa -3'
miRNA:   3'- caaGGAGUUGGU-CGGGugCUu-GCAGG- -5'
33317 5' -53.2 NC_007605.1 + 102860 0.66 0.978883
Target:  5'- --gUCUCGcCCcccguGGCCCACGAugG-CCu -3'
miRNA:   3'- caaGGAGUuGG-----UCGGGUGCUugCaGG- -5'
33317 5' -53.2 NC_007605.1 + 170839 0.66 0.978883
Target:  5'- --cCCgCAGCCcccgGGCCCGCGGACc-CCg -3'
miRNA:   3'- caaGGaGUUGG----UCGGGUGCUUGcaGG- -5'
33317 5' -53.2 NC_007605.1 + 126382 0.66 0.976511
Target:  5'- -cUCCUCGucuucgcucuugGCCGGgccgggccCCCGgGggUGUCCa -3'
miRNA:   3'- caAGGAGU------------UGGUC--------GGGUgCuuGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 66902 0.66 0.97395
Target:  5'- -cUUCUCGGCCAuGgCCAgGAACGUa- -3'
miRNA:   3'- caAGGAGUUGGU-CgGGUgCUUGCAgg -5'
33317 5' -53.2 NC_007605.1 + 64290 0.66 0.973683
Target:  5'- cUUUCgcgCAGagcCCGGCCUACGAGCGcaucgucUCCa -3'
miRNA:   3'- cAAGGa--GUU---GGUCGGGUGCUUGC-------AGG- -5'
33317 5' -53.2 NC_007605.1 + 36037 0.67 0.971191
Target:  5'- -aUCCUCAgggugGgCAGCCUggGAuaacacGCGUCCc -3'
miRNA:   3'- caAGGAGU-----UgGUCGGGugCU------UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 74604 0.67 0.971191
Target:  5'- -cUCUUUGGCCGGCCCAgGAAUagauacagCCa -3'
miRNA:   3'- caAGGAGUUGGUCGGGUgCUUGca------GG- -5'
33317 5' -53.2 NC_007605.1 + 3229 0.67 0.971191
Target:  5'- cUUCCUCAACCccGCCUguuCcAACGUCUu -3'
miRNA:   3'- cAAGGAGUUGGu-CGGGu--GcUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 114627 0.67 0.971191
Target:  5'- --gCCcCAACCAGCCCAccCGGGgG-CCu -3'
miRNA:   3'- caaGGaGUUGGUCGGGU--GCUUgCaGG- -5'
33317 5' -53.2 NC_007605.1 + 100858 0.67 0.969438
Target:  5'- cUUCCUCGAUCcccuGGCCCAguacaagacccugguCGGGCuUCCg -3'
miRNA:   3'- cAAGGAGUUGG----UCGGGU---------------GCUUGcAGG- -5'
33317 5' -53.2 NC_007605.1 + 56599 0.67 0.968229
Target:  5'- aUUCCaUCuACaggGGCCCGCacguGGACGUCCc -3'
miRNA:   3'- cAAGG-AGuUGg--UCGGGUG----CUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 84846 0.67 0.968229
Target:  5'- aGggCCUCuucuGCCAGCCCGgGGcUGUUg -3'
miRNA:   3'- -CaaGGAGu---UGGUCGGGUgCUuGCAGg -5'
33317 5' -53.2 NC_007605.1 + 131653 0.67 0.965056
Target:  5'- cUUCCUCugAGCCuuGGCCUgGCGggUGUCUu -3'
miRNA:   3'- cAAGGAG--UUGG--UCGGG-UGCuuGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.