miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 5' -53.2 NC_007605.1 + 63194 1.11 0.004795
Target:  5'- uGUUCCUCAACCAGCCCACGAACGUCCc -3'
miRNA:   3'- -CAAGGAGUUGGUCGGGUGCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 143413 0.75 0.624366
Target:  5'- -cUCC-CAGCCGGCCCG---GCGUCCu -3'
miRNA:   3'- caAGGaGUUGGUCGGGUgcuUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 40598 0.75 0.624366
Target:  5'- -cUCC-CAGCCGGCCCG---GCGUCCu -3'
miRNA:   3'- caAGGaGUUGGUCGGGUgcuUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 73382 0.73 0.754584
Target:  5'- --cCCUCAuccgcguGCCAGCgCGCGAGC-UCCa -3'
miRNA:   3'- caaGGAGU-------UGGUCGgGUGCUUGcAGG- -5'
33317 5' -53.2 NC_007605.1 + 82187 0.72 0.793113
Target:  5'- --cCCUCAACgGGgCCACGggUGcCCc -3'
miRNA:   3'- caaGGAGUUGgUCgGGUGCuuGCaGG- -5'
33317 5' -53.2 NC_007605.1 + 93351 0.72 0.802159
Target:  5'- --aCCUCucccACCAGCUCuuGAugGCGUCCg -3'
miRNA:   3'- caaGGAGu---UGGUCGGGugCU--UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 150663 0.72 0.802159
Target:  5'- -cUCCUCGGCCcuGUCCACcuguAUGUCCa -3'
miRNA:   3'- caAGGAGUUGGu-CGGGUGcu--UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 113785 0.71 0.819777
Target:  5'- -gUCCUCcguCCAGCCaCGCaGGAUGUUCa -3'
miRNA:   3'- caAGGAGuu-GGUCGG-GUG-CUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 57685 0.71 0.850504
Target:  5'- cUUCCUCAGCagCAGCCCACGccaucagccgccccGGC-UCCu -3'
miRNA:   3'- cAAGGAGUUG--GUCGGGUGC--------------UUGcAGG- -5'
33317 5' -53.2 NC_007605.1 + 88395 0.71 0.85288
Target:  5'- --aCCaggagCcGCCGGCCCACGGGC-UCCa -3'
miRNA:   3'- caaGGa----GuUGGUCGGGUGCUUGcAGG- -5'
33317 5' -53.2 NC_007605.1 + 111850 0.7 0.868246
Target:  5'- -aUCCUCAcccuuCCAG-UCACGcACGUCCa -3'
miRNA:   3'- caAGGAGUu----GGUCgGGUGCuUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 86730 0.7 0.889674
Target:  5'- -cUCCgCAACCaagGGUCCAcguCGAAUGUCCu -3'
miRNA:   3'- caAGGaGUUGG---UCGGGU---GCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 34529 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 31460 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 28391 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 22253 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 19184 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 16115 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 13046 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 25322 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.