miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 5' -53.2 NC_007605.1 + 146414 0.67 0.965056
Target:  5'- --gCCUUAugCAGCCCACcAAgGcCCc -3'
miRNA:   3'- caaGGAGUugGUCGGGUGcUUgCaGG- -5'
33317 5' -53.2 NC_007605.1 + 62738 0.67 0.961667
Target:  5'- --gCCUCGGCCaucuggaggcGGCCCugG-ACGUgCu -3'
miRNA:   3'- caaGGAGUUGG----------UCGGGugCuUGCAgG- -5'
33317 5' -53.2 NC_007605.1 + 94184 0.67 0.958058
Target:  5'- --gCCUUAACCacGGCCCACaacuuAUGUCUg -3'
miRNA:   3'- caaGGAGUUGG--UCGGGUGcu---UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 84266 0.68 0.950155
Target:  5'- --gCCUCAauauucaugGCCuGCCCGCGGGCauaggCCa -3'
miRNA:   3'- caaGGAGU---------UGGuCGGGUGCUUGca---GG- -5'
33317 5' -53.2 NC_007605.1 + 140612 0.68 0.950155
Target:  5'- --gUCUCAGgacCCAGCCCugGAGC-UCg -3'
miRNA:   3'- caaGGAGUU---GGUCGGGugCUUGcAGg -5'
33317 5' -53.2 NC_007605.1 + 2550 0.68 0.945855
Target:  5'- ---aCUCAuUCAGCUUGCGGAgGUCCg -3'
miRNA:   3'- caagGAGUuGGUCGGGUGCUUgCAGG- -5'
33317 5' -53.2 NC_007605.1 + 148671 0.68 0.941318
Target:  5'- -cUCUUCGgaaacGCCAaCCCAgGAGCGUCg -3'
miRNA:   3'- caAGGAGU-----UGGUcGGGUgCUUGCAGg -5'
33317 5' -53.2 NC_007605.1 + 150831 0.68 0.936541
Target:  5'- --gCCUC-GCCAGCCCcCGGGCcUUCa -3'
miRNA:   3'- caaGGAGuUGGUCGGGuGCUUGcAGG- -5'
33317 5' -53.2 NC_007605.1 + 93567 0.68 0.936541
Target:  5'- gGUUCCUC-ACUGGgCC-CGGACG-CCa -3'
miRNA:   3'- -CAAGGAGuUGGUCgGGuGCUUGCaGG- -5'
33317 5' -53.2 NC_007605.1 + 5086 0.68 0.936541
Target:  5'- aGUUCCUCAACaGGCCa--GAuACGUUCu -3'
miRNA:   3'- -CAAGGAGUUGgUCGGgugCU-UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 21937 0.68 0.936541
Target:  5'- cGggUCUCGGCCAGCCgaGCGAcCGgccCCg -3'
miRNA:   3'- -CaaGGAGUUGGUCGGg-UGCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 158338 0.68 0.931525
Target:  5'- -cUCCUCGuGCCGGUuggUCACGGA-GUCCg -3'
miRNA:   3'- caAGGAGU-UGGUCG---GGUGCUUgCAGG- -5'
33317 5' -53.2 NC_007605.1 + 59043 0.69 0.928399
Target:  5'- -aUCCUCAAggggcacgagauggcCCAGUUgACGGACGUgCCc -3'
miRNA:   3'- caAGGAGUU---------------GGUCGGgUGCUUGCA-GG- -5'
33317 5' -53.2 NC_007605.1 + 160018 0.69 0.920766
Target:  5'- --gCCUCucuGCCcuguuuGCCCGgGAGCGUCg -3'
miRNA:   3'- caaGGAGu--UGGu-----CGGGUgCUUGCAGg -5'
33317 5' -53.2 NC_007605.1 + 62149 0.69 0.920766
Target:  5'- -gUgCUCcACCAGCuCCACGGccauggccuugAUGUCCg -3'
miRNA:   3'- caAgGAGuUGGUCG-GGUGCU-----------UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 51702 0.69 0.90965
Target:  5'- -aUCCUCcacugccgguuggauACCAGCuucccccgaauCCACGcAACGUCCa -3'
miRNA:   3'- caAGGAGu--------------UGGUCG-----------GGUGC-UUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 15692 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 24899 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 31037 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 158117 0.69 0.909041
Target:  5'- -gUCCauaUCAACCA-CCCGgGGGCGUCa -3'
miRNA:   3'- caAGG---AGUUGGUcGGGUgCUUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.