miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 5' -53.2 NC_007605.1 + 2550 0.68 0.945855
Target:  5'- ---aCUCAuUCAGCUUGCGGAgGUCCg -3'
miRNA:   3'- caagGAGUuGGUCGGGUGCUUgCAGG- -5'
33317 5' -53.2 NC_007605.1 + 3229 0.67 0.971191
Target:  5'- cUUCCUCAACCccGCCUguuCcAACGUCUu -3'
miRNA:   3'- cAAGGAGUUGGu-CGGGu--GcUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 5086 0.68 0.936541
Target:  5'- aGUUCCUCAACaGGCCa--GAuACGUUCu -3'
miRNA:   3'- -CAAGGAGUUGgUCGGgugCU-UGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 12623 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 13046 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 15692 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 16115 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 18761 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 19184 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 21830 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 21937 0.68 0.936541
Target:  5'- cGggUCUCGGCCAGCCgaGCGAcCGgccCCg -3'
miRNA:   3'- -CaaGGAGUUGGUCGGg-UGCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 22253 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 24899 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 25322 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 27968 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 28391 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 31037 0.69 0.909041
Target:  5'- ---gCUCGGCCAGCCCAgcCGAcCGgccCCa -3'
miRNA:   3'- caagGAGUUGGUCGGGU--GCUuGCa--GG- -5'
33317 5' -53.2 NC_007605.1 + 31460 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 34529 0.7 0.889674
Target:  5'- gGUUCCUCGccccuuccccggGCUucagAGCCCA-GGAUGUCCc -3'
miRNA:   3'- -CAAGGAGU------------UGG----UCGGGUgCUUGCAGG- -5'
33317 5' -53.2 NC_007605.1 + 36037 0.67 0.971191
Target:  5'- -aUCCUCAgggugGgCAGCCUggGAuaacacGCGUCCc -3'
miRNA:   3'- caAGGAGU-----UgGUCGGGugCU------UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.