Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33318 | 3' | -47.3 | NC_007605.1 | + | 63906 | 0.66 | 0.99989 |
Target: 5'- cGUGGcucuaGCCuccCCGUGGUGGagauugacagcUUUUAUUCc -3' miRNA: 3'- -CACC-----UGGu--GGCACCACU-----------AAAAUAAGu -5' |
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33318 | 3' | -47.3 | NC_007605.1 | + | 101463 | 0.66 | 0.99989 |
Target: 5'- aUGGACCACCaaugugaucGUGGUGGa-------- -3' miRNA: 3'- cACCUGGUGG---------CACCACUaaaauaagu -5' |
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33318 | 3' | -47.3 | NC_007605.1 | + | 106146 | 0.66 | 0.99989 |
Target: 5'- -gGGGCCaccgGCCGUGGUGGg-------- -3' miRNA: 3'- caCCUGG----UGGCACCACUaaaauaagu -5' |
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33318 | 3' | -47.3 | NC_007605.1 | + | 168094 | 0.69 | 0.997139 |
Target: 5'- -gGGAgUCAUCGUGGUGGU---GUUCAu -3' miRNA: 3'- caCCU-GGUGGCACCACUAaaaUAAGU- -5' |
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33318 | 3' | -47.3 | NC_007605.1 | + | 84590 | 0.72 | 0.983632 |
Target: 5'- -aGGACCACUGUGG-GGgccugggAUUCAg -3' miRNA: 3'- caCCUGGUGGCACCaCUaaaa---UAAGU- -5' |
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33318 | 3' | -47.3 | NC_007605.1 | + | 97005 | 0.72 | 0.981556 |
Target: 5'- cUGGGCCACCuucuUGGUGGU---AUUCAa -3' miRNA: 3'- cACCUGGUGGc---ACCACUAaaaUAAGU- -5' |
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33318 | 3' | -47.3 | NC_007605.1 | + | 63682 | 1.1 | 0.018012 |
Target: 5'- cGUGGACCACCGUGGUGAUUUUAUUCAg -3' miRNA: 3'- -CACCUGGUGGCACCACUAAAAUAAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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