miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 134873 0.66 0.993431
Target:  5'- gCUUgggg----CCACCGGGGaGGCCa -3'
miRNA:   3'- aGAAauauaagaGGUGGUCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 96944 0.66 0.993431
Target:  5'- ---------cUUCUACCuggAGGGGGCCUg -3'
miRNA:   3'- agaaauauaaGAGGUGG---UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 122806 0.66 0.992436
Target:  5'- --------aUUUCCGauaauaauCUGGGGGGCCCg -3'
miRNA:   3'- agaaauauaAGAGGU--------GGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 64105 0.66 0.992436
Target:  5'- --------aUCUCCACCacGGGGaGGCUa -3'
miRNA:   3'- agaaauauaAGAGGUGG--UCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 40302 0.66 0.992436
Target:  5'- -----------gCCACCA-GGGGCCCg -3'
miRNA:   3'- agaaauauaagaGGUGGUcCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 160524 0.66 0.992436
Target:  5'- gUUUUAUugcaugUCUCaCACCAuGGGGCUg -3'
miRNA:   3'- aGAAAUAua----AGAG-GUGGUcCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 69515 0.66 0.991324
Target:  5'- uUCUcUGUGgggCgauggCCuCCGGGGGGCUg -3'
miRNA:   3'- -AGAaAUAUaa-Ga----GGuGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 51275 0.66 0.991324
Target:  5'- -------cUUCUCUAagAGGGGGCUCu -3'
miRNA:   3'- agaaauauAAGAGGUggUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 152436 0.66 0.990087
Target:  5'- ----cAUGUUggCCACCAGGGucCCCa -3'
miRNA:   3'- agaaaUAUAAgaGGUGGUCCCccGGG- -5'
33318 5' -51.6 NC_007605.1 + 126153 0.66 0.990087
Target:  5'- cUCUgggaccGUUUggaCACCcccGGGGGCCCg -3'
miRNA:   3'- -AGAaaua--UAAGag-GUGGu--CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 113778 0.66 0.990087
Target:  5'- --------gUgUCCugCAGGGGGUUCu -3'
miRNA:   3'- agaaauauaAgAGGugGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 134280 0.66 0.990087
Target:  5'- -------cUUUUCCGCCAcGGGGaGCUCu -3'
miRNA:   3'- agaaauauAAGAGGUGGU-CCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 126534 0.66 0.988716
Target:  5'- --------aUCUUCACCA-GGGGCUCu -3'
miRNA:   3'- agaaauauaAGAGGUGGUcCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 132295 0.66 0.988716
Target:  5'- cCUUUAcc--CUgC-CCAGGGGaGCCCa -3'
miRNA:   3'- aGAAAUauaaGAgGuGGUCCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 114638 0.66 0.988716
Target:  5'- -----------cCCACCcGGGGGCCUg -3'
miRNA:   3'- agaaauauaagaGGUGGuCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 30120 0.66 0.988716
Target:  5'- --------cUCUggcCCGauaCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaAGA---GGUg--GUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 152661 0.67 0.987203
Target:  5'- ----gAUGcUCUCCACCAuGGcccccGGGUCCa -3'
miRNA:   3'- agaaaUAUaAGAGGUGGU-CC-----CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 136526 0.67 0.987043
Target:  5'- aCUUUAc---CUCC-CCAGGagguuacuacgccGGGCCCg -3'
miRNA:   3'- aGAAAUauaaGAGGuGGUCC-------------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126376 0.67 0.985537
Target:  5'- gUCUUcgc--UCUUgGCCGGGccGGGCCCc -3'
miRNA:   3'- -AGAAauauaAGAGgUGGUCC--CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 74907 0.67 0.985537
Target:  5'- uUCUUagcaaaUCUCCcaccugcacACCAGGGGGCa- -3'
miRNA:   3'- -AGAAauaua-AGAGG---------UGGUCCCCCGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.