miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 126376 0.67 0.985537
Target:  5'- gUCUUcgc--UCUUgGCCGGGccGGGCCCc -3'
miRNA:   3'- -AGAAauauaAGAGgUGGUCC--CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 152661 0.67 0.987203
Target:  5'- ----gAUGcUCUCCACCAuGGcccccGGGUCCa -3'
miRNA:   3'- agaaaUAUaAGAGGUGGU-CC-----CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 136526 0.67 0.987043
Target:  5'- aCUUUAc---CUCC-CCAGGagguuacuacgccGGGCCCg -3'
miRNA:   3'- aGAAAUauaaGAGGuGGUCC-------------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 66287 0.67 0.979541
Target:  5'- ----------gUCCACaaAGGGGGCCCu -3'
miRNA:   3'- agaaauauaagAGGUGg-UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 125528 0.67 0.983711
Target:  5'- gUCU--GUAUgCUCCAgacucuggacuCCaAGGGGGCCa -3'
miRNA:   3'- -AGAaaUAUAaGAGGU-----------GG-UCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 132383 0.68 0.977181
Target:  5'- cCUgacauuUUCgccagCCGCCGGGcGGGCCg -3'
miRNA:   3'- aGAaauau-AAGa----GGUGGUCC-CCCGGg -5'
33318 5' -51.6 NC_007605.1 + 122863 0.68 0.977181
Target:  5'- gUCUgUGUAgg--CCACCGGGGGGagCa -3'
miRNA:   3'- -AGAaAUAUaagaGGUGGUCCCCCggG- -5'
33318 5' -51.6 NC_007605.1 + 82762 0.68 0.978148
Target:  5'- cUCUUgaacagg-CCACUcGGGGGCCUg -3'
miRNA:   3'- -AGAAauauaagaGGUGGuCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 4589 0.68 0.974626
Target:  5'- --------aUCUCCACCAGGcaggucaccaGGCCCc -3'
miRNA:   3'- agaaauauaAGAGGUGGUCCc---------CCGGG- -5'
33318 5' -51.6 NC_007605.1 + 87655 0.68 0.974626
Target:  5'- --------aUCUCCACCGGGgucgggugggcGGGCuCCa -3'
miRNA:   3'- agaaauauaAGAGGUGGUCC-----------CCCG-GG- -5'
33318 5' -51.6 NC_007605.1 + 154247 0.68 0.968903
Target:  5'- gUCUacgg---CUUCACCGGGGuGGCCa -3'
miRNA:   3'- -AGAaauauaaGAGGUGGUCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 48458 0.68 0.977181
Target:  5'- ---------gCUCguggggGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGg-----UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 104663 0.68 0.974626
Target:  5'- -------uUUCggcgCCGCCcGGGGGCCa -3'
miRNA:   3'- agaaauauAAGa---GGUGGuCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 109012 0.69 0.946367
Target:  5'- --------gUCUgCCACCAGgucaugaccGGGGCCCa -3'
miRNA:   3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 105944 0.69 0.946367
Target:  5'- ---------aCUCUGcCCAGGGGGCUCa -3'
miRNA:   3'- agaaauauaaGAGGU-GGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 71323 0.69 0.946367
Target:  5'- cCUcgGUGcUCUaggCACCcuGGGGGCCCu -3'
miRNA:   3'- aGAaaUAUaAGAg--GUGGu-CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126278 0.69 0.941776
Target:  5'- --------gUCUCCggGCCGGGuccGGGCCCg -3'
miRNA:   3'- agaaauauaAGAGG--UGGUCC---CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 103579 0.69 0.950713
Target:  5'- --------cUCUgCCACCAGauaggugaaGGGGCCCa -3'
miRNA:   3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 54349 0.71 0.902667
Target:  5'- ---------aCUCCGCgUAGGGGGCCUc -3'
miRNA:   3'- agaaauauaaGAGGUG-GUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 154635 0.71 0.912075
Target:  5'- cUCUgaccgggacggCUACCAGGGGGCCa -3'
miRNA:   3'- -AGAaauauaaga--GGUGGUCCCCCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.