Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33318 | 5' | -51.6 | NC_007605.1 | + | 60502 | 0.72 | 0.874925 |
Target: 5'- ---aUGUGUgccgggacgCcgCCGCCAGGuGGGCCCu -3' miRNA: 3'- agaaAUAUAa--------Ga-GGUGGUCC-CCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 12504 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 24780 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 21711 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 18642 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 15573 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 71101 | 0.72 | 0.867408 |
Target: 5'- gUCUUggAUGggCUCUagggucagagagGCCAGGGGGCUg -3' miRNA: 3'- -AGAAa-UAUaaGAGG------------UGGUCCCCCGGg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 51824 | 0.72 | 0.85967 |
Target: 5'- ----gAUggUCUCCACCAGGgaccggaaGGGCUCa -3' miRNA: 3'- agaaaUAuaAGAGGUGGUCC--------CCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 14777 | 0.72 | 0.874925 |
Target: 5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3' miRNA: 3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 17846 | 0.72 | 0.874925 |
Target: 5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3' miRNA: 3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 20915 | 0.72 | 0.874925 |
Target: 5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3' miRNA: 3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 33986 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 30918 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 27053 | 0.72 | 0.874925 |
Target: 5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3' miRNA: 3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 33190 | 0.72 | 0.874925 |
Target: 5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3' miRNA: 3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 27849 | 0.72 | 0.874925 |
Target: 5'- ---------gCUCCGCCGGGuGGCCCu -3' miRNA: 3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 23984 | 0.72 | 0.874925 |
Target: 5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3' miRNA: 3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 12586 | 0.73 | 0.826636 |
Target: 5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3' miRNA: 3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 18724 | 0.73 | 0.826636 |
Target: 5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3' miRNA: 3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 21793 | 0.73 | 0.826636 |
Target: 5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3' miRNA: 3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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