miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 48458 0.68 0.977181
Target:  5'- ---------gCUCguggggGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGg-----UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 104663 0.68 0.974626
Target:  5'- -------uUUCggcgCCGCCcGGGGGCCa -3'
miRNA:   3'- agaaauauAAGa---GGUGGuCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 132383 0.68 0.977181
Target:  5'- cCUgacauuUUCgccagCCGCCGGGcGGGCCg -3'
miRNA:   3'- aGAaauau-AAGa----GGUGGUCC-CCCGGg -5'
33318 5' -51.6 NC_007605.1 + 154247 0.68 0.968903
Target:  5'- gUCUacgg---CUUCACCGGGGuGGCCa -3'
miRNA:   3'- -AGAaauauaaGAGGUGGUCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 87655 0.68 0.974626
Target:  5'- --------aUCUCCACCGGGgucgggugggcGGGCuCCa -3'
miRNA:   3'- agaaauauaAGAGGUGGUCC-----------CCCG-GG- -5'
33318 5' -51.6 NC_007605.1 + 4589 0.68 0.974626
Target:  5'- --------aUCUCCACCAGGcaggucaccaGGCCCc -3'
miRNA:   3'- agaaauauaAGAGGUGGUCCc---------CCGGG- -5'
33318 5' -51.6 NC_007605.1 + 82762 0.68 0.978148
Target:  5'- cUCUUgaacagg-CCACUcGGGGGCCUg -3'
miRNA:   3'- -AGAAauauaagaGGUGGuCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 122863 0.68 0.977181
Target:  5'- gUCUgUGUAgg--CCACCGGGGGGagCa -3'
miRNA:   3'- -AGAaAUAUaagaGGUGGUCCCCCggG- -5'
33318 5' -51.6 NC_007605.1 + 72361 0.67 0.981715
Target:  5'- ------cAUUCUCCACgguGGGGGGCa- -3'
miRNA:   3'- agaaauaUAAGAGGUGg--UCCCCCGgg -5'
33318 5' -51.6 NC_007605.1 + 66287 0.67 0.979541
Target:  5'- ----------gUCCACaaAGGGGGCCCu -3'
miRNA:   3'- agaaauauaagAGGUGg-UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 68761 0.67 0.979541
Target:  5'- ----cAUGUUCUCgugcaagcagCACCugucccuGGGGGCCUg -3'
miRNA:   3'- agaaaUAUAAGAG----------GUGGu------CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 162191 0.67 0.983711
Target:  5'- cCUUUAg-----CCACUcuGGGGGGCUCu -3'
miRNA:   3'- aGAAAUauaagaGGUGG--UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 136526 0.67 0.987043
Target:  5'- aCUUUAc---CUCC-CCAGGagguuacuacgccGGGCCCg -3'
miRNA:   3'- aGAAAUauaaGAGGuGGUCC-------------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 125528 0.67 0.983711
Target:  5'- gUCU--GUAUgCUCCAgacucuggacuCCaAGGGGGCCa -3'
miRNA:   3'- -AGAaaUAUAaGAGGU-----------GG-UCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 152661 0.67 0.987203
Target:  5'- ----gAUGcUCUCCACCAuGGcccccGGGUCCa -3'
miRNA:   3'- agaaaUAUaAGAGGUGGU-CC-----CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126376 0.67 0.985537
Target:  5'- gUCUUcgc--UCUUgGCCGGGccGGGCCCc -3'
miRNA:   3'- -AGAAauauaAGAGgUGGUCC--CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 74907 0.67 0.985537
Target:  5'- uUCUUagcaaaUCUCCcaccugcacACCAGGGGGCa- -3'
miRNA:   3'- -AGAAauaua-AGAGG---------UGGUCCCCCGgg -5'
33318 5' -51.6 NC_007605.1 + 126153 0.66 0.990087
Target:  5'- cUCUgggaccGUUUggaCACCcccGGGGGCCCg -3'
miRNA:   3'- -AGAaaua--UAAGag-GUGGu--CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 152436 0.66 0.990087
Target:  5'- ----cAUGUUggCCACCAGGGucCCCa -3'
miRNA:   3'- agaaaUAUAAgaGGUGGUCCCccGGG- -5'
33318 5' -51.6 NC_007605.1 + 96944 0.66 0.993431
Target:  5'- ---------cUUCUACCuggAGGGGGCCUg -3'
miRNA:   3'- agaaauauaaGAGGUGG---UCCCCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.