miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 63647 1.14 0.004179
Target:  5'- cUCUUUAUAUUCUCCACCAGGGGGCCCa -3'
miRNA:   3'- -AGAAAUAUAAGAGGUGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 725 0.82 0.344271
Target:  5'- cUCUggcuc-UCUUCGCCAGGGGGCCUa -3'
miRNA:   3'- -AGAaauauaAGAGGUGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 105550 0.77 0.628988
Target:  5'- --------cUCUCUGCCAGGGGcGCCCc -3'
miRNA:   3'- agaaauauaAGAGGUGGUCCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 72972 0.76 0.681212
Target:  5'- ---------cCUCCagcgACCAGGGGGCCCc -3'
miRNA:   3'- agaaauauaaGAGG----UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 159132 0.74 0.78125
Target:  5'- ---------cCUCCGCCAGGGGcCCCg -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCCCcGGG- -5'
33318 5' -51.6 NC_007605.1 + 155576 0.74 0.78125
Target:  5'- -------cUUCUCCACCgagacccggcAGGGGGUCCu -3'
miRNA:   3'- agaaauauAAGAGGUGG----------UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 116331 0.73 0.808976
Target:  5'- cCUUUGUGUUCccuugCUGCCugaugcuguuuaGGGGGGCCUc -3'
miRNA:   3'- aGAAAUAUAAGa----GGUGG------------UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 34069 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 31000 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27931 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 15655 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 12586 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18724 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 24862 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 21793 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 115480 0.73 0.835193
Target:  5'- ----cAUAUgCUCUAuacccgccccuCCGGGGGGCCCa -3'
miRNA:   3'- agaaaUAUAaGAGGU-----------GGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 51824 0.72 0.85967
Target:  5'- ----gAUggUCUCCACCAGGgaccggaaGGGCUCa -3'
miRNA:   3'- agaaaUAuaAGAGGUGGUCC--------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 71101 0.72 0.867408
Target:  5'- gUCUUggAUGggCUCUagggucagagagGCCAGGGGGCUg -3'
miRNA:   3'- -AGAAa-UAUaaGAGG------------UGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 30918 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33986 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.