miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 30918 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27849 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 24780 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 21711 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18642 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 15573 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 12504 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 23984 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27053 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33190 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 20915 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 14777 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 60502 0.72 0.874925
Target:  5'- ---aUGUGUgccgggacgCcgCCGCCAGGuGGGCCCu -3'
miRNA:   3'- agaaAUAUAa--------Ga-GGUGGUCC-CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 54349 0.71 0.902667
Target:  5'- ---------aCUCCGCgUAGGGGGCCUc -3'
miRNA:   3'- agaaauauaaGAGGUG-GUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 154635 0.71 0.912075
Target:  5'- cUCUgaccgggacggCUACCAGGGGGCCa -3'
miRNA:   3'- -AGAaauauaaga--GGUGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 126278 0.69 0.941776
Target:  5'- --------gUCUCCggGCCGGGuccGGGCCCg -3'
miRNA:   3'- agaaauauaAGAGG--UGGUCC---CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 105944 0.69 0.946367
Target:  5'- ---------aCUCUGcCCAGGGGGCUCa -3'
miRNA:   3'- agaaauauaaGAGGU-GGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 71323 0.69 0.946367
Target:  5'- cCUcgGUGcUCUaggCACCcuGGGGGCCCu -3'
miRNA:   3'- aGAaaUAUaAGAg--GUGGu-CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 109012 0.69 0.946367
Target:  5'- --------gUCUgCCACCAGgucaugaccGGGGCCCa -3'
miRNA:   3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 103579 0.69 0.950713
Target:  5'- --------cUCUgCCACCAGauaggugaaGGGGCCCa -3'
miRNA:   3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.