Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33318 | 5' | -51.6 | NC_007605.1 | + | 162191 | 0.67 | 0.983711 |
Target: 5'- cCUUUAg-----CCACUcuGGGGGGCUCu -3' miRNA: 3'- aGAAAUauaagaGGUGG--UCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 125528 | 0.67 | 0.983711 |
Target: 5'- gUCU--GUAUgCUCCAgacucuggacuCCaAGGGGGCCa -3' miRNA: 3'- -AGAaaUAUAaGAGGU-----------GG-UCCCCCGGg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 72361 | 0.67 | 0.981715 |
Target: 5'- ------cAUUCUCCACgguGGGGGGCa- -3' miRNA: 3'- agaaauaUAAGAGGUGg--UCCCCCGgg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 68761 | 0.67 | 0.979541 |
Target: 5'- ----cAUGUUCUCgugcaagcagCACCugucccuGGGGGCCUg -3' miRNA: 3'- agaaaUAUAAGAG----------GUGGu------CCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 66287 | 0.67 | 0.979541 |
Target: 5'- ----------gUCCACaaAGGGGGCCCu -3' miRNA: 3'- agaaauauaagAGGUGg-UCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 82762 | 0.68 | 0.978148 |
Target: 5'- cUCUUgaacagg-CCACUcGGGGGCCUg -3' miRNA: 3'- -AGAAauauaagaGGUGGuCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 132383 | 0.68 | 0.977181 |
Target: 5'- cCUgacauuUUCgccagCCGCCGGGcGGGCCg -3' miRNA: 3'- aGAaauau-AAGa----GGUGGUCC-CCCGGg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 122863 | 0.68 | 0.977181 |
Target: 5'- gUCUgUGUAgg--CCACCGGGGGGagCa -3' miRNA: 3'- -AGAaAUAUaagaGGUGGUCCCCCggG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 48458 | 0.68 | 0.977181 |
Target: 5'- ---------gCUCguggggGCCGGGGGGCCCu -3' miRNA: 3'- agaaauauaaGAGg-----UGGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 4589 | 0.68 | 0.974626 |
Target: 5'- --------aUCUCCACCAGGcaggucaccaGGCCCc -3' miRNA: 3'- agaaauauaAGAGGUGGUCCc---------CCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 87655 | 0.68 | 0.974626 |
Target: 5'- --------aUCUCCACCGGGgucgggugggcGGGCuCCa -3' miRNA: 3'- agaaauauaAGAGGUGGUCC-----------CCCG-GG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 104663 | 0.68 | 0.974626 |
Target: 5'- -------uUUCggcgCCGCCcGGGGGCCa -3' miRNA: 3'- agaaauauAAGa---GGUGGuCCCCCGGg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 154247 | 0.68 | 0.968903 |
Target: 5'- gUCUacgg---CUUCACCGGGGuGGCCa -3' miRNA: 3'- -AGAaauauaaGAGGUGGUCCC-CCGGg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 103579 | 0.69 | 0.950713 |
Target: 5'- --------cUCUgCCACCAGauaggugaaGGGGCCCa -3' miRNA: 3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 71323 | 0.69 | 0.946367 |
Target: 5'- cCUcgGUGcUCUaggCACCcuGGGGGCCCu -3' miRNA: 3'- aGAaaUAUaAGAg--GUGGu-CCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 109012 | 0.69 | 0.946367 |
Target: 5'- --------gUCUgCCACCAGgucaugaccGGGGCCCa -3' miRNA: 3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 105944 | 0.69 | 0.946367 |
Target: 5'- ---------aCUCUGcCCAGGGGGCUCa -3' miRNA: 3'- agaaauauaaGAGGU-GGUCCCCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 126278 | 0.69 | 0.941776 |
Target: 5'- --------gUCUCCggGCCGGGuccGGGCCCg -3' miRNA: 3'- agaaauauaAGAGG--UGGUCC---CCCGGG- -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 154635 | 0.71 | 0.912075 |
Target: 5'- cUCUgaccgggacggCUACCAGGGGGCCa -3' miRNA: 3'- -AGAaauauaaga--GGUGGUCCCCCGGg -5' |
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33318 | 5' | -51.6 | NC_007605.1 | + | 54349 | 0.71 | 0.902667 |
Target: 5'- ---------aCUCCGCgUAGGGGGCCUc -3' miRNA: 3'- agaaauauaaGAGGUG-GUCCCCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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