miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 725 0.82 0.344271
Target:  5'- cUCUggcuc-UCUUCGCCAGGGGGCCUa -3'
miRNA:   3'- -AGAaauauaAGAGGUGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 4589 0.68 0.974626
Target:  5'- --------aUCUCCACCAGGcaggucaccaGGCCCc -3'
miRNA:   3'- agaaauauaAGAGGUGGUCCc---------CCGGG- -5'
33318 5' -51.6 NC_007605.1 + 12504 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 12586 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 14777 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 15573 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 15655 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 17846 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18642 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18724 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 20915 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 21711 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 21793 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 23984 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 24780 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 24862 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27053 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27849 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27931 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 30120 0.66 0.988716
Target:  5'- --------cUCUggcCCGauaCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaAGA---GGUg--GUCCCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.