miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 30918 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 31000 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33190 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33986 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 34069 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 40302 0.66 0.992436
Target:  5'- -----------gCCACCA-GGGGCCCg -3'
miRNA:   3'- agaaauauaagaGGUGGUcCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 48458 0.68 0.977181
Target:  5'- ---------gCUCguggggGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGg-----UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 51275 0.66 0.991324
Target:  5'- -------cUUCUCUAagAGGGGGCUCu -3'
miRNA:   3'- agaaauauAAGAGGUggUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 51824 0.72 0.85967
Target:  5'- ----gAUggUCUCCACCAGGgaccggaaGGGCUCa -3'
miRNA:   3'- agaaaUAuaAGAGGUGGUCC--------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 54349 0.71 0.902667
Target:  5'- ---------aCUCCGCgUAGGGGGCCUc -3'
miRNA:   3'- agaaauauaaGAGGUG-GUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 60502 0.72 0.874925
Target:  5'- ---aUGUGUgccgggacgCcgCCGCCAGGuGGGCCCu -3'
miRNA:   3'- agaaAUAUAa--------Ga-GGUGGUCC-CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 63647 1.14 0.004179
Target:  5'- cUCUUUAUAUUCUCCACCAGGGGGCCCa -3'
miRNA:   3'- -AGAAAUAUAAGAGGUGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 64105 0.66 0.992436
Target:  5'- --------aUCUCCACCacGGGGaGGCUa -3'
miRNA:   3'- agaaauauaAGAGGUGG--UCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 66287 0.67 0.979541
Target:  5'- ----------gUCCACaaAGGGGGCCCu -3'
miRNA:   3'- agaaauauaagAGGUGg-UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 68761 0.67 0.979541
Target:  5'- ----cAUGUUCUCgugcaagcagCACCugucccuGGGGGCCUg -3'
miRNA:   3'- agaaaUAUAAGAG----------GUGGu------CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 69515 0.66 0.991324
Target:  5'- uUCUcUGUGgggCgauggCCuCCGGGGGGCUg -3'
miRNA:   3'- -AGAaAUAUaa-Ga----GGuGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 71101 0.72 0.867408
Target:  5'- gUCUUggAUGggCUCUagggucagagagGCCAGGGGGCUg -3'
miRNA:   3'- -AGAAa-UAUaaGAGG------------UGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 71323 0.69 0.946367
Target:  5'- cCUcgGUGcUCUaggCACCcuGGGGGCCCu -3'
miRNA:   3'- aGAaaUAUaAGAg--GUGGu-CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 72361 0.67 0.981715
Target:  5'- ------cAUUCUCCACgguGGGGGGCa- -3'
miRNA:   3'- agaaauaUAAGAGGUGg--UCCCCCGgg -5'
33318 5' -51.6 NC_007605.1 + 72972 0.76 0.681212
Target:  5'- ---------cCUCCagcgACCAGGGGGCCCc -3'
miRNA:   3'- agaaauauaaGAGG----UGGUCCCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.