miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 162191 0.67 0.983711
Target:  5'- cCUUUAg-----CCACUcuGGGGGGCUCu -3'
miRNA:   3'- aGAAAUauaagaGGUGG--UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 160524 0.66 0.992436
Target:  5'- gUUUUAUugcaugUCUCaCACCAuGGGGCUg -3'
miRNA:   3'- aGAAAUAua----AGAG-GUGGUcCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 159132 0.74 0.78125
Target:  5'- ---------cCUCCGCCAGGGGcCCCg -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCCCcGGG- -5'
33318 5' -51.6 NC_007605.1 + 155576 0.74 0.78125
Target:  5'- -------cUUCUCCACCgagacccggcAGGGGGUCCu -3'
miRNA:   3'- agaaauauAAGAGGUGG----------UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 154635 0.71 0.912075
Target:  5'- cUCUgaccgggacggCUACCAGGGGGCCa -3'
miRNA:   3'- -AGAaauauaaga--GGUGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 154247 0.68 0.968903
Target:  5'- gUCUacgg---CUUCACCGGGGuGGCCa -3'
miRNA:   3'- -AGAaauauaaGAGGUGGUCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 152661 0.67 0.987203
Target:  5'- ----gAUGcUCUCCACCAuGGcccccGGGUCCa -3'
miRNA:   3'- agaaaUAUaAGAGGUGGU-CC-----CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 152436 0.66 0.990087
Target:  5'- ----cAUGUUggCCACCAGGGucCCCa -3'
miRNA:   3'- agaaaUAUAAgaGGUGGUCCCccGGG- -5'
33318 5' -51.6 NC_007605.1 + 136526 0.67 0.987043
Target:  5'- aCUUUAc---CUCC-CCAGGagguuacuacgccGGGCCCg -3'
miRNA:   3'- aGAAAUauaaGAGGuGGUCC-------------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 134873 0.66 0.993431
Target:  5'- gCUUgggg----CCACCGGGGaGGCCa -3'
miRNA:   3'- aGAAauauaagaGGUGGUCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 134280 0.66 0.990087
Target:  5'- -------cUUUUCCGCCAcGGGGaGCUCu -3'
miRNA:   3'- agaaauauAAGAGGUGGU-CCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 132383 0.68 0.977181
Target:  5'- cCUgacauuUUCgccagCCGCCGGGcGGGCCg -3'
miRNA:   3'- aGAaauau-AAGa----GGUGGUCC-CCCGGg -5'
33318 5' -51.6 NC_007605.1 + 132295 0.66 0.988716
Target:  5'- cCUUUAcc--CUgC-CCAGGGGaGCCCa -3'
miRNA:   3'- aGAAAUauaaGAgGuGGUCCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 126534 0.66 0.988716
Target:  5'- --------aUCUUCACCA-GGGGCUCu -3'
miRNA:   3'- agaaauauaAGAGGUGGUcCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126376 0.67 0.985537
Target:  5'- gUCUUcgc--UCUUgGCCGGGccGGGCCCc -3'
miRNA:   3'- -AGAAauauaAGAGgUGGUCC--CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126278 0.69 0.941776
Target:  5'- --------gUCUCCggGCCGGGuccGGGCCCg -3'
miRNA:   3'- agaaauauaAGAGG--UGGUCC---CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126153 0.66 0.990087
Target:  5'- cUCUgggaccGUUUggaCACCcccGGGGGCCCg -3'
miRNA:   3'- -AGAaaua--UAAGag-GUGGu--CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 125528 0.67 0.983711
Target:  5'- gUCU--GUAUgCUCCAgacucuggacuCCaAGGGGGCCa -3'
miRNA:   3'- -AGAaaUAUAaGAGGU-----------GG-UCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 122863 0.68 0.977181
Target:  5'- gUCUgUGUAgg--CCACCGGGGGGagCa -3'
miRNA:   3'- -AGAaAUAUaagaGGUGGUCCCCCggG- -5'
33318 5' -51.6 NC_007605.1 + 122806 0.66 0.992436
Target:  5'- --------aUUUCCGauaauaauCUGGGGGGCCCg -3'
miRNA:   3'- agaaauauaAGAGGU--------GGUCCCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.