miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 103579 0.69 0.950713
Target:  5'- --------cUCUgCCACCAGauaggugaaGGGGCCCa -3'
miRNA:   3'- agaaauauaAGA-GGUGGUC---------CCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 154247 0.68 0.968903
Target:  5'- gUCUacgg---CUUCACCGGGGuGGCCa -3'
miRNA:   3'- -AGAaauauaaGAGGUGGUCCC-CCGGg -5'
33318 5' -51.6 NC_007605.1 + 87655 0.68 0.974626
Target:  5'- --------aUCUCCACCGGGgucgggugggcGGGCuCCa -3'
miRNA:   3'- agaaauauaAGAGGUGGUCC-----------CCCG-GG- -5'
33318 5' -51.6 NC_007605.1 + 4589 0.68 0.974626
Target:  5'- --------aUCUCCACCAGGcaggucaccaGGCCCc -3'
miRNA:   3'- agaaauauaAGAGGUGGUCCc---------CCGGG- -5'
33318 5' -51.6 NC_007605.1 + 82762 0.68 0.978148
Target:  5'- cUCUUgaacagg-CCACUcGGGGGCCUg -3'
miRNA:   3'- -AGAAauauaagaGGUGGuCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 66287 0.67 0.979541
Target:  5'- ----------gUCCACaaAGGGGGCCCu -3'
miRNA:   3'- agaaauauaagAGGUGg-UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 20915 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 23984 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27053 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 105550 0.77 0.628988
Target:  5'- --------cUCUCUGCCAGGGGcGCCCc -3'
miRNA:   3'- agaaauauaAGAGGUGGUCCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 116331 0.73 0.808976
Target:  5'- cCUUUGUGUUCccuugCUGCCugaugcuguuuaGGGGGGCCUc -3'
miRNA:   3'- aGAAAUAUAAGa----GGUGG------------UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 34069 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 31000 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27931 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 24862 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 21793 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18724 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 15655 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 12586 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33190 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.