miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 154635 0.71 0.912075
Target:  5'- cUCUgaccgggacggCUACCAGGGGGCCa -3'
miRNA:   3'- -AGAaauauaaga--GGUGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 12586 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 113778 0.66 0.990087
Target:  5'- --------gUgUCCugCAGGGGGUUCu -3'
miRNA:   3'- agaaauauaAgAGGugGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 125528 0.67 0.983711
Target:  5'- gUCU--GUAUgCUCCAgacucuggacuCCaAGGGGGCCa -3'
miRNA:   3'- -AGAaaUAUAaGAGGU-----------GG-UCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 126278 0.69 0.941776
Target:  5'- --------gUCUCCggGCCGGGuccGGGCCCg -3'
miRNA:   3'- agaaauauaAGAGG--UGGUCC---CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 15655 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 66287 0.67 0.979541
Target:  5'- ----------gUCCACaaAGGGGGCCCu -3'
miRNA:   3'- agaaauauaagAGGUGg-UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18724 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 21793 0.73 0.826636
Target:  5'- ---------cCUCCucggggccagcuGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGG------------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 14777 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 105944 0.69 0.946367
Target:  5'- ---------aCUCUGcCCAGGGGGCUCa -3'
miRNA:   3'- agaaauauaaGAGGU-GGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 96944 0.66 0.993431
Target:  5'- ---------cUUCUACCuggAGGGGGCCUg -3'
miRNA:   3'- agaaauauaaGAGGUGG---UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 87655 0.68 0.974626
Target:  5'- --------aUCUCCACCGGGgucgggugggcGGGCuCCa -3'
miRNA:   3'- agaaauauaAGAGGUGGUCC-----------CCCG-GG- -5'
33318 5' -51.6 NC_007605.1 + 74907 0.67 0.985537
Target:  5'- uUCUUagcaaaUCUCCcaccugcacACCAGGGGGCa- -3'
miRNA:   3'- -AGAAauaua-AGAGG---------UGGUCCCCCGgg -5'
33318 5' -51.6 NC_007605.1 + 132295 0.66 0.988716
Target:  5'- cCUUUAcc--CUgC-CCAGGGGaGCCCa -3'
miRNA:   3'- aGAAAUauaaGAgGuGGUCCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 160524 0.66 0.992436
Target:  5'- gUUUUAUugcaugUCUCaCACCAuGGGGCUg -3'
miRNA:   3'- aGAAAUAua----AGAG-GUGGUcCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 60502 0.72 0.874925
Target:  5'- ---aUGUGUgccgggacgCcgCCGCCAGGuGGGCCCu -3'
miRNA:   3'- agaaAUAUAa--------Ga-GGUGGUCC-CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33190 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 20915 0.72 0.874925
Target:  5'- ---------cCUCUggcccgauACCGGGGGGCCCg -3'
miRNA:   3'- agaaauauaaGAGG--------UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 126153 0.66 0.990087
Target:  5'- cUCUgggaccGUUUggaCACCcccGGGGGCCCg -3'
miRNA:   3'- -AGAaaua--UAAGag-GUGGu--CCCCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.