miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33318 5' -51.6 NC_007605.1 + 21711 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 155576 0.74 0.78125
Target:  5'- -------cUUCUCCACCgagacccggcAGGGGGUCCu -3'
miRNA:   3'- agaaauauAAGAGGUGG----------UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 115480 0.73 0.835193
Target:  5'- ----cAUAUgCUCUAuacccgccccuCCGGGGGGCCCa -3'
miRNA:   3'- agaaaUAUAaGAGGU-----------GGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 18642 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 51824 0.72 0.85967
Target:  5'- ----gAUggUCUCCACCAGGgaccggaaGGGCUCa -3'
miRNA:   3'- agaaaUAuaAGAGGUGGUCC--------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 69515 0.66 0.991324
Target:  5'- uUCUcUGUGgggCgauggCCuCCGGGGGGCUg -3'
miRNA:   3'- -AGAaAUAUaa-Ga----GGuGGUCCCCCGGg -5'
33318 5' -51.6 NC_007605.1 + 24780 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 27849 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 30918 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 152436 0.66 0.990087
Target:  5'- ----cAUGUUggCCACCAGGGucCCCa -3'
miRNA:   3'- agaaaUAUAAgaGGUGGUCCCccGGG- -5'
33318 5' -51.6 NC_007605.1 + 134280 0.66 0.990087
Target:  5'- -------cUUUUCCGCCAcGGGGaGCUCu -3'
miRNA:   3'- agaaauauAAGAGGUGGU-CCCC-CGGG- -5'
33318 5' -51.6 NC_007605.1 + 114638 0.66 0.988716
Target:  5'- -----------cCCACCcGGGGGCCUg -3'
miRNA:   3'- agaaauauaagaGGUGGuCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 136526 0.67 0.987043
Target:  5'- aCUUUAc---CUCC-CCAGGagguuacuacgccGGGCCCg -3'
miRNA:   3'- aGAAAUauaaGAGGuGGUCC-------------CCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 162191 0.67 0.983711
Target:  5'- cCUUUAg-----CCACUcuGGGGGGCUCu -3'
miRNA:   3'- aGAAAUauaagaGGUGG--UCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 68761 0.67 0.979541
Target:  5'- ----cAUGUUCUCgugcaagcagCACCugucccuGGGGGCCUg -3'
miRNA:   3'- agaaaUAUAAGAG----------GUGGu------CCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 72361 0.67 0.981715
Target:  5'- ------cAUUCUCCACgguGGGGGGCa- -3'
miRNA:   3'- agaaauaUAAGAGGUGg--UCCCCCGgg -5'
33318 5' -51.6 NC_007605.1 + 132383 0.68 0.977181
Target:  5'- cCUgacauuUUCgccagCCGCCGGGcGGGCCg -3'
miRNA:   3'- aGAaauau-AAGa----GGUGGUCC-CCCGGg -5'
33318 5' -51.6 NC_007605.1 + 122863 0.68 0.977181
Target:  5'- gUCUgUGUAgg--CCACCGGGGGGagCa -3'
miRNA:   3'- -AGAaAUAUaagaGGUGGUCCCCCggG- -5'
33318 5' -51.6 NC_007605.1 + 48458 0.68 0.977181
Target:  5'- ---------gCUCguggggGCCGGGGGGCCCu -3'
miRNA:   3'- agaaauauaaGAGg-----UGGUCCCCCGGG- -5'
33318 5' -51.6 NC_007605.1 + 33986 0.72 0.874925
Target:  5'- ---------gCUCCGCCGGGuGGCCCu -3'
miRNA:   3'- agaaauauaaGAGGUGGUCCcCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.