miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33319 3' -58 NC_007605.1 + 49869 0.66 0.855595
Target:  5'- aCUGUUUCUUaC-GUGCCCCGCGUGg -3'
miRNA:   3'- gGACGAAGGGcGaCGCGGGGUGUAUg -5'
33319 3' -58 NC_007605.1 + 63641 0.66 0.847848
Target:  5'- --gGCUgggCCUGCagccGUGCCCCGCcgAUGCg -3'
miRNA:   3'- ggaCGAa--GGGCGa---CGCGGGGUG--UAUG- -5'
33319 3' -58 NC_007605.1 + 101469 0.66 0.847848
Target:  5'- aCUGCUgaCCCGCUGCGUCaUAUuUAUg -3'
miRNA:   3'- gGACGAa-GGGCGACGCGGgGUGuAUG- -5'
33319 3' -58 NC_007605.1 + 162207 0.66 0.839913
Target:  5'- gCCUGUgcgcaugUCCaaggugcugaUGCUGUGCCCCAgGaACa -3'
miRNA:   3'- -GGACGa------AGG----------GCGACGCGGGGUgUaUG- -5'
33319 3' -58 NC_007605.1 + 87868 0.66 0.835064
Target:  5'- gCCU-CUUUCCGCUGgGCCUccugccgcggggccuCACAUAg -3'
miRNA:   3'- -GGAcGAAGGGCGACgCGGG---------------GUGUAUg -5'
33319 3' -58 NC_007605.1 + 148771 0.66 0.831795
Target:  5'- cCCcGCaUUCCUGCUuucgGCGCCCCuGCGg-- -3'
miRNA:   3'- -GGaCG-AAGGGCGA----CGCGGGG-UGUaug -5'
33319 3' -58 NC_007605.1 + 160688 0.66 0.831795
Target:  5'- gCCU-CUgCCgCGCUGCucGCCCCugGUAg -3'
miRNA:   3'- -GGAcGAaGG-GCGACG--CGGGGugUAUg -5'
33319 3' -58 NC_007605.1 + 85097 0.66 0.823501
Target:  5'- uCCUGCUaccaUgCUGUUGCGCCagugggcacccgCCAcCAUGCa -3'
miRNA:   3'- -GGACGA----AgGGCGACGCGG------------GGU-GUAUG- -5'
33319 3' -58 NC_007605.1 + 123518 0.66 0.823501
Target:  5'- aCCUGCcgacUCCC-CUG-GCCCCAgcUGCa -3'
miRNA:   3'- -GGACGa---AGGGcGACgCGGGGUguAUG- -5'
33319 3' -58 NC_007605.1 + 48173 0.66 0.823501
Target:  5'- cCCgaGCUucUCCCGCUGgGCCCagucuCACGc-- -3'
miRNA:   3'- -GGa-CGA--AGGGCGACgCGGG-----GUGUaug -5'
33319 3' -58 NC_007605.1 + 100442 0.67 0.814183
Target:  5'- --aGCUUggUGCUGUGCCCCugcccggGCGUACg -3'
miRNA:   3'- ggaCGAAggGCGACGCGGGG-------UGUAUG- -5'
33319 3' -58 NC_007605.1 + 115216 0.67 0.806415
Target:  5'- cCCUGCUcggccUCCGCcGCcuuCCCCACcgGCg -3'
miRNA:   3'- -GGACGAa----GGGCGaCGc--GGGGUGuaUG- -5'
33319 3' -58 NC_007605.1 + 153681 0.67 0.806415
Target:  5'- uCUUGCcgUCCGCaGCacCCCCACAUAUc -3'
miRNA:   3'- -GGACGaaGGGCGaCGc-GGGGUGUAUG- -5'
33319 3' -58 NC_007605.1 + 164536 0.67 0.806415
Target:  5'- gUCgGCUgUCCUGCagGCcaGCUCCGCGUACa -3'
miRNA:   3'- -GGaCGA-AGGGCGa-CG--CGGGGUGUAUG- -5'
33319 3' -58 NC_007605.1 + 161486 0.67 0.797639
Target:  5'- aCCUGCUgcaggCCCccgggGCUGgGCUgCGCAaGCa -3'
miRNA:   3'- -GGACGAa----GGG-----CGACgCGGgGUGUaUG- -5'
33319 3' -58 NC_007605.1 + 62935 0.67 0.797639
Target:  5'- cCCcGCUgCCCGcCUGCGCgCgCugAUGCc -3'
miRNA:   3'- -GGaCGAaGGGC-GACGCGgG-GugUAUG- -5'
33319 3' -58 NC_007605.1 + 94895 0.67 0.797639
Target:  5'- cCCUGCcuccggccccaUCCCGCga-GCCCCagcagACAUGCu -3'
miRNA:   3'- -GGACGa----------AGGGCGacgCGGGG-----UGUAUG- -5'
33319 3' -58 NC_007605.1 + 40097 0.67 0.788718
Target:  5'- -gUGCggUCCGCUG-GCCCCACc--- -3'
miRNA:   3'- ggACGaaGGGCGACgCGGGGUGuaug -5'
33319 3' -58 NC_007605.1 + 39999 0.67 0.776918
Target:  5'- cCCUGCUcccacccgguucccUCCCccaggGC-GUGCCCCGCuUGCc -3'
miRNA:   3'- -GGACGA--------------AGGG-----CGaCGCGGGGUGuAUG- -5'
33319 3' -58 NC_007605.1 + 71237 0.67 0.770475
Target:  5'- gCCUGCUUCCU--UGUGCuCCUGCcgGCc -3'
miRNA:   3'- -GGACGAAGGGcgACGCG-GGGUGuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.