miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33319 3' -58 NC_007605.1 + 64566 1.11 0.001406
Target:  5'- uCCUGCUUCCCGCUGCGCCCCACAUACa -3'
miRNA:   3'- -GGACGAAGGGCGACGCGGGGUGUAUG- -5'
33319 3' -58 NC_007605.1 + 135087 0.8 0.172137
Target:  5'- cCCUGCgcagUCCaaGCUGCGCCCacaCACAUGCa -3'
miRNA:   3'- -GGACGa---AGGg-CGACGCGGG---GUGUAUG- -5'
33319 3' -58 NC_007605.1 + 152930 0.79 0.209042
Target:  5'- uCCUGCUaUCCCGCUcgucgccGCGCCUCcCAUGCu -3'
miRNA:   3'- -GGACGA-AGGGCGA-------CGCGGGGuGUAUG- -5'
33319 3' -58 NC_007605.1 + 65513 0.76 0.298506
Target:  5'- cCCUGCgugucggCCCGCUGUGCCCgCACc--- -3'
miRNA:   3'- -GGACGaa-----GGGCGACGCGGG-GUGuaug -5'
33319 3' -58 NC_007605.1 + 84937 0.73 0.440266
Target:  5'- cCCUGCgaccuaUCCCuaUGCGCCCCu--UGCg -3'
miRNA:   3'- -GGACGa-----AGGGcgACGCGGGGuguAUG- -5'
33319 3' -58 NC_007605.1 + 170379 0.72 0.533735
Target:  5'- gCUGCg-CCCGCgcgGCGCCCC-CcgACc -3'
miRNA:   3'- gGACGaaGGGCGa--CGCGGGGuGuaUG- -5'
33319 3' -58 NC_007605.1 + 170901 0.72 0.533735
Target:  5'- gCUGCg-CCCGCgcgGCGCCCC-CcgACc -3'
miRNA:   3'- gGACGaaGGGCGa--CGCGGGGuGuaUG- -5'
33319 3' -58 NC_007605.1 + 61992 0.72 0.533735
Target:  5'- uUUGUccCCCGCUG-GCCuCCGCGUACa -3'
miRNA:   3'- gGACGaaGGGCGACgCGG-GGUGUAUG- -5'
33319 3' -58 NC_007605.1 + 171439 0.72 0.533735
Target:  5'- gCUGCg-CCCGCgcgGCGCCCC-CcgACc -3'
miRNA:   3'- gGACGaaGGGCGa--CGCGGGGuGuaUG- -5'
33319 3' -58 NC_007605.1 + 65275 0.71 0.5921
Target:  5'- aUCUGCcUCCCGCgcugccuggugaaUGCGCCUCugGcggUGCg -3'
miRNA:   3'- -GGACGaAGGGCG-------------ACGCGGGGugU---AUG- -5'
33319 3' -58 NC_007605.1 + 117590 0.7 0.60313
Target:  5'- uCCUGCccccUCCC-CUGCGCCUU-CGUGCa -3'
miRNA:   3'- -GGACGa---AGGGcGACGCGGGGuGUAUG- -5'
33319 3' -58 NC_007605.1 + 9032 0.7 0.60313
Target:  5'- -aUGCUUCCCGUUGgGUaaCAUAUGCu -3'
miRNA:   3'- ggACGAAGGGCGACgCGggGUGUAUG- -5'
33319 3' -58 NC_007605.1 + 39228 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 39103 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 38978 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 38854 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 38604 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 38479 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 38354 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5'
33319 3' -58 NC_007605.1 + 38729 0.7 0.633309
Target:  5'- cCCcGCUgggCaCCGCUGCGCCgCCGCc--- -3'
miRNA:   3'- -GGaCGAa--G-GGCGACGCGG-GGUGuaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.