miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33319 5' -58.1 NC_007605.1 + 84636 0.66 0.844797
Target:  5'- cAGUGGgcCGaCGGGGCCaGGCucuugcugcguGGGUGGUCg -3'
miRNA:   3'- aUCAUC--GC-GUCCCGG-CUG-----------UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 124164 0.66 0.836744
Target:  5'- -uGUGGcCGCAgGGGUCGAggaucagcccCGGGU-GCCg -3'
miRNA:   3'- auCAUC-GCGU-CCCGGCU----------GUCCAuCGG- -5'
33319 5' -58.1 NC_007605.1 + 85097 0.66 0.836744
Target:  5'- --cUGGCGUGGGGCa-GCuguuuccGGUGGCCg -3'
miRNA:   3'- aucAUCGCGUCCCGgcUGu------CCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 50233 0.66 0.836744
Target:  5'- ---aGGCGCAccucGGGCCGcgcgcCAGGcuccgAGCCg -3'
miRNA:   3'- aucaUCGCGU----CCCGGCu----GUCCa----UCGG- -5'
33319 5' -58.1 NC_007605.1 + 159035 0.66 0.836744
Target:  5'- ----uGCGCcGGGCgGACGcGGUcAGCCc -3'
miRNA:   3'- aucauCGCGuCCCGgCUGU-CCA-UCGG- -5'
33319 5' -58.1 NC_007605.1 + 104514 0.66 0.835929
Target:  5'- cGGUGGgGCugagaccaugcucAGuGGCCGucugGCAGGgGGCCg -3'
miRNA:   3'- aUCAUCgCG-------------UC-CCGGC----UGUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 63612 0.66 0.828509
Target:  5'- gGGUGGCGguGGaguaugcuucGUCGGgGGGcugGGCCu -3'
miRNA:   3'- aUCAUCGCguCC----------CGGCUgUCCa--UCGG- -5'
33319 5' -58.1 NC_007605.1 + 40091 0.66 0.828509
Target:  5'- gGGUgGGUGCGGuccGCUGGCcccacccuggGGGUAGCCg -3'
miRNA:   3'- aUCA-UCGCGUCc--CGGCUG----------UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 55821 0.66 0.828509
Target:  5'- aAGUAcaucGCaaauGCAGGGUCGAUAGucggGGCCg -3'
miRNA:   3'- aUCAU----CG----CGUCCCGGCUGUCca--UCGG- -5'
33319 5' -58.1 NC_007605.1 + 37037 0.66 0.828509
Target:  5'- gAGUAGUGguGuGGgUGGCAGaGUGGUa -3'
miRNA:   3'- aUCAUCGCguC-CCgGCUGUC-CAUCGg -5'
33319 5' -58.1 NC_007605.1 + 96585 0.66 0.820099
Target:  5'- aGGUAGUGgaggcCGGGGUCGAgGaGGUAGUg -3'
miRNA:   3'- aUCAUCGC-----GUCCCGGCUgU-CCAUCGg -5'
33319 5' -58.1 NC_007605.1 + 2380 0.66 0.820099
Target:  5'- gGGUguuuGGUgGCAGGGCUG-CuGGUGGCa -3'
miRNA:   3'- aUCA----UCG-CGUCCCGGCuGuCCAUCGg -5'
33319 5' -58.1 NC_007605.1 + 52884 0.66 0.820099
Target:  5'- cGGcGGCGCuGGGCgGGCGGaagcuacacUGGCCa -3'
miRNA:   3'- aUCaUCGCGuCCCGgCUGUCc--------AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 60999 0.66 0.819249
Target:  5'- ---cAGCGCAGGGCgGccagagaGCGGGUuuugGGCa -3'
miRNA:   3'- aucaUCGCGUCCCGgC-------UGUCCA----UCGg -5'
33319 5' -58.1 NC_007605.1 + 18535 0.66 0.811522
Target:  5'- gGGaUGGgGCuuGGCCGGgucuaAGGUGGCCu -3'
miRNA:   3'- aUC-AUCgCGucCCGGCUg----UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 21604 0.66 0.811522
Target:  5'- gGGaUGGgGCuuGGCCGGgucuaAGGUGGCCu -3'
miRNA:   3'- aUC-AUCgCGucCCGGCUg----UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 24673 0.66 0.811522
Target:  5'- gGGaUGGgGCuuGGCCGGgucuaAGGUGGCCu -3'
miRNA:   3'- aUC-AUCgCGucCCGGCUg----UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 33880 0.66 0.811522
Target:  5'- gGGaUGGgGCuuGGCCGGgucuaAGGUGGCCu -3'
miRNA:   3'- aUC-AUCgCGucCCGGCUg----UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 27742 0.66 0.811522
Target:  5'- gGGaUGGgGCuuGGCCGGgucuaAGGUGGCCu -3'
miRNA:   3'- aUC-AUCgCGucCCGGCUg----UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 15466 0.66 0.811522
Target:  5'- gGGaUGGgGCuuGGCCGGgucuaAGGUGGCCu -3'
miRNA:   3'- aUC-AUCgCGucCCGGCUg----UCCAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.