miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33319 5' -58.1 NC_007605.1 + 141646 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 142257 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 142461 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141238 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141951 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141442 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141544 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141849 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 140728 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 38899 0.66 0.802786
Target:  5'- gGGUuccuGGCGCuccgGGGGCa-GCGGGcGGCCg -3'
miRNA:   3'- aUCA----UCGCG----UCCCGgcUGUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 142155 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141340 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 142359 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141747 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 140932 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 140830 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 84636 0.66 0.844797
Target:  5'- cAGUGGgcCGaCGGGGCCaGGCucuugcugcguGGGUGGUCg -3'
miRNA:   3'- aUCAUC--GC-GUCCCGG-CUG-----------UCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 142053 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 142563 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 141034 0.66 0.802786
Target:  5'- cUGG-AGCucGgGGGGCgGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCG--CgUCCCGgCuGUCCAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.