miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33319 5' -58.1 NC_007605.1 + 64528 1.11 0.001411
Target:  5'- aUAGUAGCGCAGGGCCGACAGGUAGCCg -3'
miRNA:   3'- -AUCAUCGCGUCCCGGCUGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 110782 0.76 0.280278
Target:  5'- cAGgacGUGCA-GGCCGACAGGUAGUCc -3'
miRNA:   3'- aUCau-CGCGUcCCGGCUGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 157542 0.76 0.286854
Target:  5'- ---gAGCGCGGGGUC-AgAGGUAGCCa -3'
miRNA:   3'- aucaUCGCGUCCCGGcUgUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 22143 0.75 0.336292
Target:  5'- ---aGGCGCGGGGCCGgucgGCuGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGC----UGuCC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 54523 0.75 0.356954
Target:  5'- cGGUAGcCGCGGGGgUGGCGGGccaagcguccagucUGGCCa -3'
miRNA:   3'- aUCAUC-GCGUCCCgGCUGUCC--------------AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 62320 0.75 0.359305
Target:  5'- cAGUgGGgGCGGGGCCGGCGGGggagagGGUg -3'
miRNA:   3'- aUCA-UCgCGUCCCGGCUGUCCa-----UCGg -5'
33319 5' -58.1 NC_007605.1 + 37348 0.74 0.391661
Target:  5'- gGGUuGCGgGGGGUCgcaGAUGGGUGGCCa -3'
miRNA:   3'- aUCAuCGCgUCCCGG---CUGUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 136625 0.73 0.417141
Target:  5'- aAGgggGGCaGCGGGGCCGcguaGGGUAGCg -3'
miRNA:   3'- aUCa--UCG-CGUCCCGGCug--UCCAUCGg -5'
33319 5' -58.1 NC_007605.1 + 64704 0.73 0.417141
Target:  5'- gGGUgGGUGUAGGGgUGACGGGggcUGGCCa -3'
miRNA:   3'- aUCA-UCGCGUCCCgGCUGUCC---AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 34419 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 28281 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 31350 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 25212 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 19075 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 12937 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 16006 0.73 0.43468
Target:  5'- ---aGGCGCGGGGCCGGuCGgcucGGcUGGCCg -3'
miRNA:   3'- aucaUCGCGUCCCGGCU-GU----CC-AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 143365 0.72 0.46085
Target:  5'- gGGUGGCGCGGGGUCccugccuGGCaccaGGGUccGGCCu -3'
miRNA:   3'- aUCAUCGCGUCCCGG-------CUG----UCCA--UCGG- -5'
33319 5' -58.1 NC_007605.1 + 40550 0.72 0.46085
Target:  5'- gGGUGGCGCGGGGUCccugccuGGCaccaGGGUccGGCCu -3'
miRNA:   3'- aUCAUCGCGUCCCGG-------CUG----UCCA--UCGG- -5'
33319 5' -58.1 NC_007605.1 + 163663 0.72 0.489719
Target:  5'- gGGcUGGCGCAGGcGCugcgcgucCGACGGGUGGgCa -3'
miRNA:   3'- aUC-AUCGCGUCC-CG--------GCUGUCCAUCgG- -5'
33319 5' -58.1 NC_007605.1 + 135188 0.72 0.489719
Target:  5'- ---gGGCGCAGGGCCucugcCGGGaAGCCc -3'
miRNA:   3'- aucaUCGCGUCCCGGcu---GUCCaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.