miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33319 5' -58.1 NC_007605.1 + 2293 0.69 0.678604
Target:  5'- aGGUGGCgGCgggcuuccagAGGGCCcuuCuGGUGGCCg -3'
miRNA:   3'- aUCAUCG-CG----------UCCCGGcu-GuCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 61232 0.7 0.617975
Target:  5'- gAGUAG-GgGGGGCUuACAGGggagGGCCg -3'
miRNA:   3'- aUCAUCgCgUCCCGGcUGUCCa---UCGG- -5'
33319 5' -58.1 NC_007605.1 + 10011 0.7 0.628099
Target:  5'- ----uGCGCAGGuGCC-ACAGGUuccuGCCg -3'
miRNA:   3'- aucauCGCGUCC-CGGcUGUCCAu---CGG- -5'
33319 5' -58.1 NC_007605.1 + 59979 0.7 0.628099
Target:  5'- ---gGGUGCGGGGaugaaGACAGGUGGUg -3'
miRNA:   3'- aucaUCGCGUCCCgg---CUGUCCAUCGg -5'
33319 5' -58.1 NC_007605.1 + 153928 0.69 0.657446
Target:  5'- gAGggGGC-CAGGGCCuGCAGGUuggcggggcucagGGCCu -3'
miRNA:   3'- aUCa-UCGcGUCCCGGcUGUCCA-------------UCGG- -5'
33319 5' -58.1 NC_007605.1 + 169724 0.69 0.668545
Target:  5'- cGGgAGCGgGGGGCgGcGCGGG-AGCCu -3'
miRNA:   3'- aUCaUCGCgUCCCGgC-UGUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 170262 0.69 0.668545
Target:  5'- cGGgAGCGgGGGGCgGcGCGGG-AGCCu -3'
miRNA:   3'- aUCaUCGCgUCCCGgC-UGUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 170784 0.69 0.668545
Target:  5'- cGGgAGCGgGGGGCgGcGCGGG-AGCCu -3'
miRNA:   3'- aUCaUCGCgUCCCGgC-UGUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 171322 0.69 0.668545
Target:  5'- cGGgAGCGgGGGGCgGcGCGGG-AGCCu -3'
miRNA:   3'- aUCaUCGCgUCCCGgC-UGUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 140628 0.7 0.607863
Target:  5'- cUGG-AGCuCGGGGgCGGcCGGGUGGCCc -3'
miRNA:   3'- -AUCaUCGcGUCCCgGCU-GUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 157090 0.7 0.597767
Target:  5'- ----uGCGCAGGG-UGAC-GGUGGCCu -3'
miRNA:   3'- aucauCGCGUCCCgGCUGuCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 63058 0.7 0.597767
Target:  5'- -uGgcGCGCAGGGCUgcuggccccggGGgAGGUGGCg -3'
miRNA:   3'- auCauCGCGUCCCGG-----------CUgUCCAUCGg -5'
33319 5' -58.1 NC_007605.1 + 157542 0.76 0.286854
Target:  5'- ---gAGCGCGGGGUC-AgAGGUAGCCa -3'
miRNA:   3'- aucaUCGCGUCCCGGcUgUCCAUCGG- -5'
33319 5' -58.1 NC_007605.1 + 54523 0.75 0.356954
Target:  5'- cGGUAGcCGCGGGGgUGGCGGGccaagcguccagucUGGCCa -3'
miRNA:   3'- aUCAUC-GCGUCCCgGCUGUCC--------------AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 64704 0.73 0.417141
Target:  5'- gGGUgGGUGUAGGGgUGACGGGggcUGGCCa -3'
miRNA:   3'- aUCA-UCGCGUCCCgGCUGUCC---AUCGG- -5'
33319 5' -58.1 NC_007605.1 + 135188 0.72 0.489719
Target:  5'- ---gGGCGCAGGGCCucugcCGGGaAGCCc -3'
miRNA:   3'- aucaUCGCGUCCCGGcu---GUCCaUCGG- -5'
33319 5' -58.1 NC_007605.1 + 62614 0.71 0.518434
Target:  5'- gUGGUGGCGgAGGaccGCCGcCGGGUaagcguGGCCg -3'
miRNA:   3'- -AUCAUCGCgUCC---CGGCuGUCCA------UCGG- -5'
33319 5' -58.1 NC_007605.1 + 46440 0.71 0.528156
Target:  5'- aUAGUGGC-CAGGGCCucgGugGGGUccAGCg -3'
miRNA:   3'- -AUCAUCGcGUCCCGG---CugUCCA--UCGg -5'
33319 5' -58.1 NC_007605.1 + 56598 0.71 0.547795
Target:  5'- -cGUGGC-CAGGGaCGGCAGGcaGGCCu -3'
miRNA:   3'- auCAUCGcGUCCCgGCUGUCCa-UCGG- -5'
33319 5' -58.1 NC_007605.1 + 104696 0.7 0.577658
Target:  5'- aGGUcGCGgacCAGGGUCaACAGGUGGUCg -3'
miRNA:   3'- aUCAuCGC---GUCCCGGcUGUCCAUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.