miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33320 3' -55.8 NC_007605.1 + 39954 0.66 0.93704
Target:  5'- -aCGcCUGGAuugccggcuGGGGGcUGGgGUCCCGGGa -3'
miRNA:   3'- gaGC-GACUU---------UCUCC-AUCgCGGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 40104 0.66 0.93704
Target:  5'- -cCGCUGGccccacccuGGGGGUAGC-CgCCGGGu -3'
miRNA:   3'- gaGCGACUu--------UCUCCAUCGcGgGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 161480 0.66 0.921564
Target:  5'- gUCGCaguaagGGAGGAGGUGGC-CUCCgcguAGGc -3'
miRNA:   3'- gAGCGa-----CUUUCUCCAUCGcGGGG----UCC- -5'
33320 3' -55.8 NC_007605.1 + 74059 0.66 0.915935
Target:  5'- --aGCUGggGGAGGUcuuuGGCuCCUCGGc -3'
miRNA:   3'- gagCGACuuUCUCCA----UCGcGGGGUCc -5'
33320 3' -55.8 NC_007605.1 + 107583 0.66 0.915935
Target:  5'- -aCGCUGAgcGAGaagaccAGCGUCuCCAGGg -3'
miRNA:   3'- gaGCGACUuuCUCca----UCGCGG-GGUCC- -5'
33320 3' -55.8 NC_007605.1 + 46870 0.66 0.915935
Target:  5'- -aCGgUGcAGAGGGGUugggAGCuGCCCCuGGa -3'
miRNA:   3'- gaGCgAC-UUUCUCCA----UCG-CGGGGuCC- -5'
33320 3' -55.8 NC_007605.1 + 154423 0.67 0.910072
Target:  5'- --gGCUGGAuGAcGGUGGC-CCCCuGGu -3'
miRNA:   3'- gagCGACUUuCU-CCAUCGcGGGGuCC- -5'
33320 3' -55.8 NC_007605.1 + 122969 0.67 0.910072
Target:  5'- -aCGCUGAcacccuGGccGCGCCCCAGu -3'
miRNA:   3'- gaGCGACUuucu--CCauCGCGGGGUCc -5'
33320 3' -55.8 NC_007605.1 + 55727 0.67 0.901474
Target:  5'- gUCGCagaGGGAGAGGcgggagagaugggGGCGCCUgGGGc -3'
miRNA:   3'- gAGCGa--CUUUCUCCa------------UCGCGGGgUCC- -5'
33320 3' -55.8 NC_007605.1 + 51049 0.67 0.891097
Target:  5'- -gUGCUGGuuGGGGaAGgaGCUCCAGGg -3'
miRNA:   3'- gaGCGACUuuCUCCaUCg-CGGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 61385 0.67 0.891097
Target:  5'- -gCGC--AGAGGGGUuacGGCGUCCCAaGGg -3'
miRNA:   3'- gaGCGacUUUCUCCA---UCGCGGGGU-CC- -5'
33320 3' -55.8 NC_007605.1 + 105280 0.67 0.891097
Target:  5'- gCUgGgUGGGAGAGcGcGGC-CCCCGGGg -3'
miRNA:   3'- -GAgCgACUUUCUC-CaUCGcGGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 120314 0.67 0.88432
Target:  5'- cCUgGCaccuccGGGAGGGccaacucguaGUGGUGCCCCAGGu -3'
miRNA:   3'- -GAgCGa-----CUUUCUC----------CAUCGCGGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 99407 0.67 0.88432
Target:  5'- aUUGCUGAAcuGGGGcUGGUGgCCUGGGa -3'
miRNA:   3'- gAGCGACUUu-CUCC-AUCGCgGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 57976 0.67 0.88432
Target:  5'- cCUUGgUGGcguGGAGGgAGCGgggaCCCCGGGg -3'
miRNA:   3'- -GAGCgACUu--UCUCCaUCGC----GGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 151054 0.67 0.88363
Target:  5'- -gUGCcgGAGAGAGGUAGaaaGCgggcccaugaaggCCCGGGg -3'
miRNA:   3'- gaGCGa-CUUUCUCCAUCg--CG-------------GGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 131501 0.67 0.877323
Target:  5'- gCUUGCUGGuuaccGAGucuGGUGccaggucagucGCGCCCCuGGa -3'
miRNA:   3'- -GAGCGACU-----UUCu--CCAU-----------CGCGGGGuCC- -5'
33320 3' -55.8 NC_007605.1 + 63535 0.68 0.870841
Target:  5'- cCUCGCagcaccgucaAGGUgacGGUGCCCCAGGa -3'
miRNA:   3'- -GAGCGacuuuc----UCCA---UCGCGGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 38884 0.68 0.87011
Target:  5'- gUC-CUGggGcagccGGGGUuccuGGCGCUCCGGGg -3'
miRNA:   3'- gAGcGACuuU-----CUCCA----UCGCGGGGUCC- -5'
33320 3' -55.8 NC_007605.1 + 39008 0.68 0.87011
Target:  5'- gUC-CUGggGcagccGGGGUuccuGGCGCUCCGGGg -3'
miRNA:   3'- gAGcGACuuU-----CUCCA----UCGCGGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.