miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33320 5' -59.2 NC_007605.1 + 61851 0.66 0.848307
Target:  5'- uGGCCUcugugccccGGGU---GUCCCGCUCGcGGUg -3'
miRNA:   3'- -CCGGA---------CCCAgugCAGGGUGAGCcUCG- -5'
33320 5' -59.2 NC_007605.1 + 133247 0.66 0.840575
Target:  5'- aGGCUUGGGg-----CCCACaugaguUCGGGGCc -3'
miRNA:   3'- -CCGGACCCagugcaGGGUG------AGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 3246 0.66 0.840575
Target:  5'- gGGCCcgGGGggcgCGCGUagCCCGagaugcaCGGGGCc -3'
miRNA:   3'- -CCGGa-CCCa---GUGCA--GGGUga-----GCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 54231 0.66 0.840575
Target:  5'- uGGCCUGGGUCAUuagUgGCuUCGGguAGCg -3'
miRNA:   3'- -CCGGACCCAGUGcagGgUG-AGCC--UCG- -5'
33320 5' -59.2 NC_007605.1 + 71355 0.66 0.832668
Target:  5'- gGGCuCUGGG-CGC-UCUUGCUCccgGGGGCa -3'
miRNA:   3'- -CCG-GACCCaGUGcAGGGUGAG---CCUCG- -5'
33320 5' -59.2 NC_007605.1 + 91710 0.66 0.827843
Target:  5'- gGGCCUGGauGUC-CGgcgcgacuuuggggCCCGCaggcgCGGGGCc -3'
miRNA:   3'- -CCGGACC--CAGuGCa-------------GGGUGa----GCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 115986 0.66 0.824594
Target:  5'- gGGUCUcacgaGGGUCugccGCGUguuugCUGCUCGGGGCa -3'
miRNA:   3'- -CCGGA-----CCCAG----UGCAg----GGUGAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 107729 0.66 0.80712
Target:  5'- cGCCaGGG-CACugacuauGUCCCuguCUCGGAGa -3'
miRNA:   3'- cCGGaCCCaGUG-------CAGGGu--GAGCCUCg -5'
33320 5' -59.2 NC_007605.1 + 155266 0.67 0.79943
Target:  5'- gGGgUUGaGGUCuACGaguUCCCA-UCGGAGCu -3'
miRNA:   3'- -CCgGAC-CCAG-UGC---AGGGUgAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 160209 0.67 0.790753
Target:  5'- cGGCCcagaggaGGG-CGCgGUCCCggGCcCGGGGCg -3'
miRNA:   3'- -CCGGa------CCCaGUG-CAGGG--UGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 74298 0.67 0.790753
Target:  5'- aGGCCgcgUGGcGUggcUGCGUCCCAagaUCGuGGGCu -3'
miRNA:   3'- -CCGG---ACC-CA---GUGCAGGGUg--AGC-CUCG- -5'
33320 5' -59.2 NC_007605.1 + 54100 0.67 0.773011
Target:  5'- uGGCCUGGaGgagauCGUCCCGCUCuc-GCc -3'
miRNA:   3'- -CCGGACC-Cagu--GCAGGGUGAGccuCG- -5'
33320 5' -59.2 NC_007605.1 + 72491 0.67 0.772111
Target:  5'- cGCCUGGGUCAgcUCCUgcaucuggcccucGCUCauGAGCa -3'
miRNA:   3'- cCGGACCCAGUgcAGGG-------------UGAGc-CUCG- -5'
33320 5' -59.2 NC_007605.1 + 164709 0.67 0.754806
Target:  5'- cGGCgaGGG-CGCGaCCCACgccucgacCGGGGUc -3'
miRNA:   3'- -CCGgaCCCaGUGCaGGGUGa-------GCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 62507 0.68 0.74555
Target:  5'- uGGCCcggUGGGaCGCcuUCCCGCgggaGGGGCu -3'
miRNA:   3'- -CCGG---ACCCaGUGc-AGGGUGag--CCUCG- -5'
33320 5' -59.2 NC_007605.1 + 148103 0.68 0.74555
Target:  5'- aGGCCcacGGGUCACGgggcagCCgCAC-CGG-GCc -3'
miRNA:   3'- -CCGGa--CCCAGUGCa-----GG-GUGaGCCuCG- -5'
33320 5' -59.2 NC_007605.1 + 133402 0.68 0.73714
Target:  5'- uGGCCagGuGGUCACGcaugaugccguccagCuCCACgCGGAGCa -3'
miRNA:   3'- -CCGGa-C-CCAGUGCa--------------G-GGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 52962 0.68 0.736201
Target:  5'- aGCUUGGGg-GCGUCCgGCU-GGGGUc -3'
miRNA:   3'- cCGGACCCagUGCAGGgUGAgCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 159532 0.68 0.72677
Target:  5'- cGUCUGGGgggACGUggUCUACUgGGAGCu -3'
miRNA:   3'- cCGGACCCag-UGCA--GGGUGAgCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 138843 0.69 0.668884
Target:  5'- uGCCUcGGGUaccccuauccuaUAgGUCCUAC-CGGAGCu -3'
miRNA:   3'- cCGGA-CCCA------------GUgCAGGGUGaGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.