miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33320 5' -59.2 NC_007605.1 + 64835 1.13 0.001122
Target:  5'- gGGCCUGGGUCACGUCCCACUCGGAGCu -3'
miRNA:   3'- -CCGGACCCAGUGCAGGGUGAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 47186 0.78 0.224544
Target:  5'- aGGCCUGGcGUCACG---CACUCGGGGUg -3'
miRNA:   3'- -CCGGACC-CAGUGCaggGUGAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 143331 0.76 0.30902
Target:  5'- cGGCCUGGGagcgCACccccaucCCCGC-CGGAGCg -3'
miRNA:   3'- -CCGGACCCa---GUGca-----GGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 90538 0.73 0.450031
Target:  5'- aGGCUgagGGGcagaaaacCACGaCCCAgUCGGAGCg -3'
miRNA:   3'- -CCGGa--CCCa-------GUGCaGGGUgAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 150835 0.73 0.458862
Target:  5'- aGGgCUGGGUCugcgACGUUCUGCU-GGAGCc -3'
miRNA:   3'- -CCgGACCCAG----UGCAGGGUGAgCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 74087 0.72 0.49415
Target:  5'- aGCCUGGccgccGUCACGUCCCuggccgaGCUgGGGGa -3'
miRNA:   3'- cCGGACC-----CAGUGCAGGG-------UGAgCCUCg -5'
33320 5' -59.2 NC_007605.1 + 77505 0.7 0.580658
Target:  5'- gGGCCUGGGgcgACGUUgCAUUUugggGGGGCg -3'
miRNA:   3'- -CCGGACCCag-UGCAGgGUGAG----CCUCG- -5'
33320 5' -59.2 NC_007605.1 + 164902 0.7 0.619809
Target:  5'- aGGCgUGGGUCGCGcccUCgCCGC-CGGAc- -3'
miRNA:   3'- -CCGgACCCAGUGC---AG-GGUGaGCCUcg -5'
33320 5' -59.2 NC_007605.1 + 133281 0.69 0.659094
Target:  5'- uGGCCUGgagagcaugcaGGUCAgGUCCCcCUCcacgGGAGg -3'
miRNA:   3'- -CCGGAC-----------CCAGUgCAGGGuGAG----CCUCg -5'
33320 5' -59.2 NC_007605.1 + 126281 0.69 0.663013
Target:  5'- gGGCCUGGGUUuCG-CCUGCUCGuguucaacaccaaucGGGUg -3'
miRNA:   3'- -CCGGACCCAGuGCaGGGUGAGC---------------CUCG- -5'
33320 5' -59.2 NC_007605.1 + 132177 0.69 0.667906
Target:  5'- aGCCUGGGUC-CGgcacggcacccucUCCCcagacaguccGgUCGGAGCc -3'
miRNA:   3'- cCGGACCCAGuGC-------------AGGG----------UgAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39910 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39660 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39535 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39410 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39285 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39160 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39036 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 138843 0.69 0.668884
Target:  5'- uGCCUcGGGUaccccuauccuaUAgGUCCUAC-CGGAGCu -3'
miRNA:   3'- cCGGA-CCCA------------GUgCAGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39785 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.