miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33320 5' -59.2 NC_007605.1 + 3246 0.66 0.840575
Target:  5'- gGGCCcgGGGggcgCGCGUagCCCGagaugcaCGGGGCc -3'
miRNA:   3'- -CCGGa-CCCa---GUGCA--GGGUga-----GCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 38536 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 38661 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 38786 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 38911 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39036 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39160 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39285 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39410 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39535 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39660 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39785 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 39910 0.69 0.668884
Target:  5'- uGCCcagcgGGGcCACccCCCACcCGGAGCg -3'
miRNA:   3'- cCGGa----CCCaGUGcaGGGUGaGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 47186 0.78 0.224544
Target:  5'- aGGCCUGGcGUCACG---CACUCGGGGUg -3'
miRNA:   3'- -CCGGACC-CAGUGCaggGUGAGCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 52962 0.68 0.736201
Target:  5'- aGCUUGGGg-GCGUCCgGCU-GGGGUc -3'
miRNA:   3'- cCGGACCCagUGCAGGgUGAgCCUCG- -5'
33320 5' -59.2 NC_007605.1 + 54100 0.67 0.773011
Target:  5'- uGGCCUGGaGgagauCGUCCCGCUCuc-GCc -3'
miRNA:   3'- -CCGGACC-Cagu--GCAGGGUGAGccuCG- -5'
33320 5' -59.2 NC_007605.1 + 54231 0.66 0.840575
Target:  5'- uGGCCUGGGUCAUuagUgGCuUCGGguAGCg -3'
miRNA:   3'- -CCGGACCCAGUGcagGgUG-AGCC--UCG- -5'
33320 5' -59.2 NC_007605.1 + 61851 0.66 0.848307
Target:  5'- uGGCCUcugugccccGGGU---GUCCCGCUCGcGGUg -3'
miRNA:   3'- -CCGGA---------CCCAgugCAGGGUGAGCcUCG- -5'
33320 5' -59.2 NC_007605.1 + 62507 0.68 0.74555
Target:  5'- uGGCCcggUGGGaCGCcuUCCCGCgggaGGGGCu -3'
miRNA:   3'- -CCGG---ACCCaGUGc-AGGGUGag--CCUCG- -5'
33320 5' -59.2 NC_007605.1 + 64835 1.13 0.001122
Target:  5'- gGGCCUGGGUCACGUCCCACUCGGAGCu -3'
miRNA:   3'- -CCGGACCCAGUGCAGGGUGAGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.