Results 21 - 40 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33322 | 5' | -57.6 | NC_007605.1 | + | 141655 | 0.66 | 0.874176 |
Target: 5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3' miRNA: 3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 77603 | 0.66 | 0.874176 |
Target: 5'- uGGCugguGGUGCCuGGGCG--GGGUgCUGGc -3' miRNA: 3'- -CCGu---CUACGG-UCCGUaaUCCGgGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 143081 | 0.66 | 0.874176 |
Target: 5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3' miRNA: 3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 142572 | 0.66 | 0.874176 |
Target: 5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3' miRNA: 3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 142164 | 0.66 | 0.874176 |
Target: 5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3' miRNA: 3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 141451 | 0.66 | 0.874176 |
Target: 5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3' miRNA: 3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 141043 | 0.66 | 0.874176 |
Target: 5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3' miRNA: 3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 92512 | 0.66 | 0.869864 |
Target: 5'- aGCaAGGUGCUGGGCGUggAccgcgcggccaucauGGCCuCCGGc -3' miRNA: 3'- cCG-UCUACGGUCCGUAa-U---------------CCGG-GGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 161675 | 0.66 | 0.869864 |
Target: 5'- -aCAGGuUGCCAGGCAccacaucuaugacguUgcucucuucgUGGGCCCgGGa -3' miRNA: 3'- ccGUCU-ACGGUCCGU---------------A----------AUCCGGGgCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 39356 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 2090 | 0.66 | 0.866948 |
Target: 5'- aGCAGGUuCUcaGCAaucagGGGCCCCGGg -3' miRNA: 3'- cCGUCUAcGGucCGUaa---UCCGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 39731 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 39481 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 39231 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 143359 | 0.66 | 0.866948 |
Target: 5'- cGCGGGgucccUGCCuGGCAccAGGgUCCGGc -3' miRNA: 3'- cCGUCU-----ACGGuCCGUaaUCCgGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 38857 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 38732 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 39606 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 38482 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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33322 | 5' | -57.6 | NC_007605.1 | + | 38607 | 0.66 | 0.866948 |
Target: 5'- cGGCGGccGCCcGGCu---GcCCCCGGa -3' miRNA: 3'- -CCGUCuaCGGuCCGuaauCcGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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