miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 151664 0.66 0.92889
Target:  5'- aGGGCCAAACAgGCggCgggGCCUGGGu -3'
miRNA:   3'- gCUCGGUUUGU-CGagGaa-CGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 59890 0.66 0.92889
Target:  5'- aGGGCCuuGCAGaugCuCUUGCCUAGa- -3'
miRNA:   3'- gCUCGGuuUGUCga-G-GAACGGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 97851 0.66 0.92889
Target:  5'- -aAGCgAAGCAGCUCC--GCCCucacGGGc -3'
miRNA:   3'- gcUCGgUUUGUCGAGGaaCGGGu---CCU- -5'
33323 3' -55.7 NC_007605.1 + 73866 0.66 0.92889
Target:  5'- gGAGCCAAAgaccuccccCAGCUCg--GCCaGGGAc -3'
miRNA:   3'- gCUCGGUUU---------GUCGAGgaaCGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 151560 0.66 0.92889
Target:  5'- aCGGGCUGGugGGCUCCcucugggaggUGCCCGc-- -3'
miRNA:   3'- -GCUCGGUUugUCGAGGa---------ACGGGUccu -5'
33323 3' -55.7 NC_007605.1 + 115553 0.66 0.92889
Target:  5'- uGGGCCAcGCugggaguccGGCcCUUUGCCUGGGGc -3'
miRNA:   3'- gCUCGGUuUG---------UCGaGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 153766 0.66 0.92889
Target:  5'- gGGGCCAcaAACAgGCUCCggGUggugugggcggCCAGGGc -3'
miRNA:   3'- gCUCGGU--UUGU-CGAGGaaCG-----------GGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 104131 0.66 0.92889
Target:  5'- gGAGCUgAAGCGcGCcccaUCCgaaGCCCGGGAc -3'
miRNA:   3'- gCUCGG-UUUGU-CG----AGGaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 144369 0.66 0.92889
Target:  5'- -uGGCCAAAaucCAGCuUCCgucCCCGGGAc -3'
miRNA:   3'- gcUCGGUUU---GUCG-AGGaacGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 98621 0.66 0.923521
Target:  5'- gCGAGCCGGGCuuGC-CCUuuUGCacgguCAGGAu -3'
miRNA:   3'- -GCUCGGUUUGu-CGaGGA--ACGg----GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 160791 0.66 0.923521
Target:  5'- -uGGCCAGACGGCgCUUgcgucUGCCCccGGAg -3'
miRNA:   3'- gcUCGGUUUGUCGaGGA-----ACGGGu-CCU- -5'
33323 3' -55.7 NC_007605.1 + 73256 0.66 0.917911
Target:  5'- uGAG-CGAGCAGCUCUUUGucuCCCGGc- -3'
miRNA:   3'- gCUCgGUUUGUCGAGGAAC---GGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 54007 0.66 0.917911
Target:  5'- -cGGCCGggAACGGCUCaugGCCCuaccGGAa -3'
miRNA:   3'- gcUCGGU--UUGUCGAGgaaCGGGu---CCU- -5'
33323 3' -55.7 NC_007605.1 + 165964 0.66 0.917911
Target:  5'- uGGGCgG---AGUUCCUgagaGCCCAGGGg -3'
miRNA:   3'- gCUCGgUuugUCGAGGAa---CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 48348 0.66 0.912061
Target:  5'- uCGGGaCCGucacACAGCuuugugagUCCagGCCCGGGAc -3'
miRNA:   3'- -GCUC-GGUu---UGUCG--------AGGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 50699 0.66 0.905972
Target:  5'- aGGGCCGAaucuccGCGGCUUCUU-CCCGGc- -3'
miRNA:   3'- gCUCGGUU------UGUCGAGGAAcGGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 67267 0.66 0.905972
Target:  5'- gCGAGCCAuaaAGCAGUUUCUggagGCCaCGGc- -3'
miRNA:   3'- -GCUCGGU---UUGUCGAGGAa---CGG-GUCcu -5'
33323 3' -55.7 NC_007605.1 + 61541 0.66 0.905972
Target:  5'- aCGGGCgAAGCGGCUCgUgggGCUCGcGGu -3'
miRNA:   3'- -GCUCGgUUUGUCGAGgAa--CGGGU-CCu -5'
33323 3' -55.7 NC_007605.1 + 61738 0.66 0.905972
Target:  5'- gCGAGCCccacGAGCcGCUUCgcccgugugGCCCGGGc -3'
miRNA:   3'- -GCUCGG----UUUGuCGAGGaa-------CGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 80331 0.66 0.905972
Target:  5'- --uGCggaGAAUGGCUUCUcGCCCAGGGa -3'
miRNA:   3'- gcuCGg--UUUGUCGAGGAaCGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.