miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 165964 0.66 0.917911
Target:  5'- uGGGCgG---AGUUCCUgagaGCCCAGGGg -3'
miRNA:   3'- gCUCGgUuugUCGAGGAa---CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 73256 0.66 0.917911
Target:  5'- uGAG-CGAGCAGCUCUUUGucuCCCGGc- -3'
miRNA:   3'- gCUCgGUUUGUCGAGGAAC---GGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 73627 0.67 0.867602
Target:  5'- gCGGGCCuGGGCcgGGCUCaguguggacgugGCCCGGGAg -3'
miRNA:   3'- -GCUCGG-UUUG--UCGAGgaa---------CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 51465 0.67 0.864595
Target:  5'- aGAGCCcccucuuagagaAggUGGCcCCUggcagGCCCAGGGa -3'
miRNA:   3'- gCUCGG------------UuuGUCGaGGAa----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 88584 0.67 0.879285
Target:  5'- uGGGCC-GGCGGCUCCUgguauCCCuGGu -3'
miRNA:   3'- gCUCGGuUUGUCGAGGAac---GGGuCCu -5'
33323 3' -55.7 NC_007605.1 + 159757 0.67 0.879285
Target:  5'- cCGAGCCAuGCAGCggUUggGCCgAGGc -3'
miRNA:   3'- -GCUCGGUuUGUCGa-GGaaCGGgUCCu -5'
33323 3' -55.7 NC_007605.1 + 148737 0.67 0.864595
Target:  5'- aGGGCgAAugGGCUgCagcaacGCCCAGGGa -3'
miRNA:   3'- gCUCGgUUugUCGAgGaa----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 34016 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 30947 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 27879 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 117599 0.67 0.879285
Target:  5'- uGAGgaaGAAguGUUCCagGCCCAGGAc -3'
miRNA:   3'- gCUCgg-UUUguCGAGGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 88506 0.67 0.879285
Target:  5'- gGGGCC-GGCGGCUCCUgguauCCCuGGu -3'
miRNA:   3'- gCUCGGuUUGUCGAGGAac---GGGuCCu -5'
33323 3' -55.7 NC_007605.1 + 159908 0.67 0.893089
Target:  5'- gGGGCCAcggAGCGGCUCUUcUGCggCGGGGu -3'
miRNA:   3'- gCUCGGU---UUGUCGAGGA-ACGg-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 137262 0.67 0.877856
Target:  5'- -cGGCCAcACAGUgggcuucgggggCCUgugUGCCCGGGGg -3'
miRNA:   3'- gcUCGGUuUGUCGa-----------GGA---ACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 150810 0.67 0.879285
Target:  5'- gGAGcCCGGGCcGC-CCaccGCCCGGGAg -3'
miRNA:   3'- gCUC-GGUUUGuCGaGGaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 12534 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 15603 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 18672 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 21741 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 24810 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.