Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33323 | 3' | -55.7 | NC_007605.1 | + | 12534 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 15603 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 159908 | 0.67 | 0.893089 |
Target: 5'- gGGGCCAcggAGCGGCUCUUcUGCggCGGGGu -3' miRNA: 3'- gCUCGGU---UUGUCGAGGA-ACGg-GUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 59017 | 0.67 | 0.89574 |
Target: 5'- -cGGCCAAacuuGCAGUgggCCUgguugcacgaggccgUGCCUAGGAu -3' miRNA: 3'- gcUCGGUU----UGUCGa--GGA---------------ACGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 53813 | 0.67 | 0.8863 |
Target: 5'- aGGGCCAugAGCcGUUCCcggccgcUGCCCGGGc -3' miRNA: 3'- gCUCGGU--UUGuCGAGGa------ACGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 34016 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 30947 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 24810 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 21741 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 18672 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 137262 | 0.67 | 0.877856 |
Target: 5'- -cGGCCAcACAGUgggcuucgggggCCUgugUGCCCGGGGg -3' miRNA: 3'- gcUCGGUuUGUCGa-----------GGA---ACGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 151664 | 0.66 | 0.92889 |
Target: 5'- aGGGCCAAACAgGCggCgggGCCUGGGu -3' miRNA: 3'- gCUCGGUUUGU-CGagGaa-CGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 153766 | 0.66 | 0.92889 |
Target: 5'- gGGGCCAcaAACAgGCUCCggGUggugugggcggCCAGGGc -3' miRNA: 3'- gCUCGGU--UUGU-CGAGGaaCG-----------GGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 104131 | 0.66 | 0.92889 |
Target: 5'- gGAGCUgAAGCGcGCcccaUCCgaaGCCCGGGAc -3' miRNA: 3'- gCUCGG-UUUGU-CG----AGGaa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 59890 | 0.66 | 0.92889 |
Target: 5'- aGGGCCuuGCAGaugCuCUUGCCUAGa- -3' miRNA: 3'- gCUCGGuuUGUCga-G-GAACGGGUCcu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 160791 | 0.66 | 0.923521 |
Target: 5'- -uGGCCAGACGGCgCUUgcgucUGCCCccGGAg -3' miRNA: 3'- gcUCGGUUUGUCGaGGA-----ACGGGu-CCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 61541 | 0.66 | 0.905972 |
Target: 5'- aCGGGCgAAGCGGCUCgUgggGCUCGcGGu -3' miRNA: 3'- -GCUCGgUUUGUCGAGgAa--CGGGU-CCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 67267 | 0.66 | 0.905972 |
Target: 5'- gCGAGCCAuaaAGCAGUUUCUggagGCCaCGGc- -3' miRNA: 3'- -GCUCGGU---UUGUCGAGGAa---CGG-GUCcu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 151560 | 0.66 | 0.92889 |
Target: 5'- aCGGGCUGGugGGCUCCcucugggaggUGCCCGc-- -3' miRNA: 3'- -GCUCGGUUugUCGAGGa---------ACGGGUccu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 97851 | 0.66 | 0.92889 |
Target: 5'- -aAGCgAAGCAGCUCC--GCCCucacGGGc -3' miRNA: 3'- gcUCGgUUUGUCGAGGaaCGGGu---CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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