miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 68027 1.09 0.003155
Target:  5'- cCGAGCCAAACAGCUCCUUGCCCAGGAc -3'
miRNA:   3'- -GCUCGGUUUGUCGAGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 104552 0.81 0.223728
Target:  5'- gGGGCCGGGCGcGCuccgUCCUUGUCCAGGAg -3'
miRNA:   3'- gCUCGGUUUGU-CG----AGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 46863 0.8 0.258768
Target:  5'- uCGGGCCAGAgCGGC-CCUUGCCUGGGu -3'
miRNA:   3'- -GCUCGGUUU-GUCGaGGAACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 4258 0.78 0.298164
Target:  5'- cCGAGCCAAAgguCAGCUUCacGCCCAGGc -3'
miRNA:   3'- -GCUCGGUUU---GUCGAGGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 69840 0.75 0.480256
Target:  5'- uGAGaUAAACAGCacggUCUUGCCCAGGGg -3'
miRNA:   3'- gCUCgGUUUGUCGa---GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 53596 0.74 0.489799
Target:  5'- aGAGCCAAccuCAGCUCCUccaUGCCauccauGGAg -3'
miRNA:   3'- gCUCGGUUu--GUCGAGGA---ACGGgu----CCU- -5'
33323 3' -55.7 NC_007605.1 + 122275 0.74 0.489799
Target:  5'- -cGGCCAGAgCAGCUCUUUGCagaguaCCGGGAg -3'
miRNA:   3'- gcUCGGUUU-GUCGAGGAACG------GGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 72387 0.74 0.528799
Target:  5'- cCGGGCCAAACuuaguucaGGUgugCCaUGCCCGGGGc -3'
miRNA:   3'- -GCUCGGUUUG--------UCGa--GGaACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 95578 0.73 0.538732
Target:  5'- gGGGCCAGguACAGgaCCUggaaaugGCCUAGGAg -3'
miRNA:   3'- gCUCGGUU--UGUCgaGGAa------CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 100586 0.73 0.558782
Target:  5'- uCGAGgCGGACAGCUUCguggagGCCCAcGGGc -3'
miRNA:   3'- -GCUCgGUUUGUCGAGGaa----CGGGU-CCU- -5'
33323 3' -55.7 NC_007605.1 + 157841 0.73 0.568887
Target:  5'- uCGAGCUuccaAGAUAGCguguaagugcCCUUGUCCAGGAa -3'
miRNA:   3'- -GCUCGG----UUUGUCGa---------GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 3183 0.73 0.579037
Target:  5'- aGGGCCGucugcACGGCcgCCUUGCCCAuGAa -3'
miRNA:   3'- gCUCGGUu----UGUCGa-GGAACGGGUcCU- -5'
33323 3' -55.7 NC_007605.1 + 154482 0.72 0.599444
Target:  5'- aGAGCaCAGGCuAGCcggCCUgcGCCCGGGAg -3'
miRNA:   3'- gCUCG-GUUUG-UCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 66274 0.72 0.609688
Target:  5'- -aGGCCAGcGCGGCUCUgucggUGCCgCGGGAg -3'
miRNA:   3'- gcUCGGUU-UGUCGAGGa----ACGG-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 10698 0.72 0.619949
Target:  5'- gGAGCCGGGCGGCUCg--GCUaAGGAg -3'
miRNA:   3'- gCUCGGUUUGUCGAGgaaCGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 61941 0.71 0.671231
Target:  5'- gGAGCCGGGCGGCgUCaaaGgCCAGGAc -3'
miRNA:   3'- gCUCGGUUUGUCG-AGgaaCgGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 53844 0.71 0.681425
Target:  5'- uGAGCUAAcACGGCUCCUggaaGUCgAGGGc -3'
miRNA:   3'- gCUCGGUU-UGUCGAGGAa---CGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 152500 0.71 0.688537
Target:  5'- aGAGCCAGacuggguggugucuGCAGCaaaagaggaaCUUGCCCAGGc -3'
miRNA:   3'- gCUCGGUU--------------UGUCGag--------GAACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 110669 0.71 0.701682
Target:  5'- aGGGCC-GGCAGCUCUaucgccucuaUUGCCagaGGGAa -3'
miRNA:   3'- gCUCGGuUUGUCGAGG----------AACGGg--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 159808 0.7 0.711727
Target:  5'- aGGGCCAGGCGacGCUCCcggGCaaaCAGGGc -3'
miRNA:   3'- gCUCGGUUUGU--CGAGGaa-CGg--GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.