miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 16106 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 22243 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 28381 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 31450 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 34519 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 159808 0.7 0.711727
Target:  5'- aGGGCCAGGCGacGCUCCcggGCaaaCAGGGc -3'
miRNA:   3'- gCUCGGUUUGU--CGAGGaa-CGg--GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 25312 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 13037 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 41406 0.7 0.750164
Target:  5'- uGAGCaagaauaaGGACGGCUCCUUauuaaccugaucaGCCCcGGAg -3'
miRNA:   3'- gCUCGg-------UUUGUCGAGGAA-------------CGGGuCCU- -5'
33323 3' -55.7 NC_007605.1 + 126220 0.7 0.751131
Target:  5'- cCGcAGCgGAGaCAGCUCCUggUGCCCcacGGAc -3'
miRNA:   3'- -GC-UCGgUUU-GUCGAGGA--ACGGGu--CCU- -5'
33323 3' -55.7 NC_007605.1 + 67375 0.7 0.751131
Target:  5'- aGuGCgAAACAGCUCCUggaUCCAGGu -3'
miRNA:   3'- gCuCGgUUUGUCGAGGAac-GGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 69326 0.69 0.779609
Target:  5'- uCGAGCgGAgacGCAGCauuuUCUgcGCCCGGGGa -3'
miRNA:   3'- -GCUCGgUU---UGUCG----AGGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 98853 0.69 0.788848
Target:  5'- gCGAGgaCAAAguGgUUgUUGCCCAGGAa -3'
miRNA:   3'- -GCUCg-GUUUguCgAGgAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 99348 0.69 0.788848
Target:  5'- gGAGCC-GGCGGCcUCggaggUGCCCGGGu -3'
miRNA:   3'- gCUCGGuUUGUCGaGGa----ACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 97395 0.69 0.797944
Target:  5'- gCGGGCCAGGuuGUgggCCggGUCCAGGGg -3'
miRNA:   3'- -GCUCGGUUUguCGa--GGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 129562 0.68 0.815676
Target:  5'- -cGGCCAAGC-GCUCCa-GCCCguAGGAu -3'
miRNA:   3'- gcUCGGUUUGuCGAGGaaCGGG--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 151307 0.68 0.815676
Target:  5'- aCGGGCCGccgaggGGCAgGCUgCggccGCCCAGGGg -3'
miRNA:   3'- -GCUCGGU------UUGU-CGAgGaa--CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 12426 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 18564 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 15495 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.