Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33323 | 3' | -55.7 | NC_007605.1 | + | 12426 | 0.68 | 0.8319 |
Target: 5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3' miRNA: 3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 21633 | 0.68 | 0.8319 |
Target: 5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3' miRNA: 3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 30840 | 0.68 | 0.8319 |
Target: 5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3' miRNA: 3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 27771 | 0.68 | 0.8319 |
Target: 5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3' miRNA: 3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 110523 | 0.68 | 0.840995 |
Target: 5'- gGGGCgCAGACGGC-CCUUcGCCU-GGAu -3' miRNA: 3'- gCUCG-GUUUGUCGaGGAA-CGGGuCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 105559 | 0.68 | 0.849062 |
Target: 5'- gCGAGCCGcgucguugcccuGACcGCgcgUCgagGCCCAGGAg -3' miRNA: 3'- -GCUCGGU------------UUGuCGa--GGaa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 74593 | 0.68 | 0.849062 |
Target: 5'- gCGGGCUc--UGGCUCUUUggccgGCCCAGGAa -3' miRNA: 3'- -GCUCGGuuuGUCGAGGAA-----CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 138929 | 0.68 | 0.849062 |
Target: 5'- cCGGGCCu--CAGC-CaucgGCCCGGGGg -3' miRNA: 3'- -GCUCGGuuuGUCGaGgaa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 75368 | 0.68 | 0.849062 |
Target: 5'- uGGGcCCAGAguGCUCCggcUGCCgcaccaCGGGAg -3' miRNA: 3'- gCUC-GGUUUguCGAGGa--ACGG------GUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 111983 | 0.68 | 0.856931 |
Target: 5'- -uGGCaAAACAGCUCUgccugcUGCCuCAGGAa -3' miRNA: 3'- gcUCGgUUUGUCGAGGa-----ACGG-GUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 51465 | 0.67 | 0.864595 |
Target: 5'- aGAGCCcccucuuagagaAggUGGCcCCUggcagGCCCAGGGa -3' miRNA: 3'- gCUCGG------------UuuGUCGaGGAa----CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 148737 | 0.67 | 0.864595 |
Target: 5'- aGGGCgAAugGGCUgCagcaacGCCCAGGGa -3' miRNA: 3'- gCUCGgUUugUCGAgGaa----CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 73627 | 0.67 | 0.867602 |
Target: 5'- gCGGGCCuGGGCcgGGCUCaguguggacgugGCCCGGGAg -3' miRNA: 3'- -GCUCGG-UUUG--UCGAGgaa---------CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 21741 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 18672 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 24810 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 84726 | 0.67 | 0.872048 |
Target: 5'- aGAGCCGGuucaugauCAGCUaCUgccUGcCCCAGGAc -3' miRNA: 3'- gCUCGGUUu-------GUCGA-GGa--AC-GGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 27879 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 34016 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 30947 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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