miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 73627 0.67 0.867602
Target:  5'- gCGGGCCuGGGCcgGGCUCaguguggacgugGCCCGGGAg -3'
miRNA:   3'- -GCUCGG-UUUG--UCGAGgaa---------CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 148737 0.67 0.864595
Target:  5'- aGGGCgAAugGGCUgCagcaacGCCCAGGGa -3'
miRNA:   3'- gCUCGgUUugUCGAgGaa----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 51465 0.67 0.864595
Target:  5'- aGAGCCcccucuuagagaAggUGGCcCCUggcagGCCCAGGGa -3'
miRNA:   3'- gCUCGG------------UuuGUCGaGGAa----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 111983 0.68 0.856931
Target:  5'- -uGGCaAAACAGCUCUgccugcUGCCuCAGGAa -3'
miRNA:   3'- gcUCGgUUUGUCGAGGa-----ACGG-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 138929 0.68 0.849062
Target:  5'- cCGGGCCu--CAGC-CaucgGCCCGGGGg -3'
miRNA:   3'- -GCUCGGuuuGUCGaGgaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 105559 0.68 0.849062
Target:  5'- gCGAGCCGcgucguugcccuGACcGCgcgUCgagGCCCAGGAg -3'
miRNA:   3'- -GCUCGGU------------UUGuCGa--GGaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 75368 0.68 0.849062
Target:  5'- uGGGcCCAGAguGCUCCggcUGCCgcaccaCGGGAg -3'
miRNA:   3'- gCUC-GGUUUguCGAGGa--ACGG------GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 74593 0.68 0.849062
Target:  5'- gCGGGCUc--UGGCUCUUUggccgGCCCAGGAa -3'
miRNA:   3'- -GCUCGGuuuGUCGAGGAA-----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 110523 0.68 0.840995
Target:  5'- gGGGCgCAGACGGC-CCUUcGCCU-GGAu -3'
miRNA:   3'- gCUCG-GUUUGUCGaGGAA-CGGGuCCU- -5'
33323 3' -55.7 NC_007605.1 + 30840 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 27771 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 24702 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 21633 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 15495 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 12426 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 18564 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 151307 0.68 0.815676
Target:  5'- aCGGGCCGccgaggGGCAgGCUgCggccGCCCAGGGg -3'
miRNA:   3'- -GCUCGGU------UUGU-CGAgGaa--CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 129562 0.68 0.815676
Target:  5'- -cGGCCAAGC-GCUCCa-GCCCguAGGAu -3'
miRNA:   3'- gcUCGGUUUGuCGAGGaaCGGG--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 97395 0.69 0.797944
Target:  5'- gCGGGCCAGGuuGUgggCCggGUCCAGGGg -3'
miRNA:   3'- -GCUCGGUUUguCGa--GGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 99348 0.69 0.788848
Target:  5'- gGAGCC-GGCGGCcUCggaggUGCCCGGGu -3'
miRNA:   3'- gCUCGGuUUGUCGaGGa----ACGGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.