miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 3183 0.73 0.579037
Target:  5'- aGGGCCGucugcACGGCcgCCUUGCCCAuGAa -3'
miRNA:   3'- gCUCGGUu----UGUCGa-GGAACGGGUcCU- -5'
33323 3' -55.7 NC_007605.1 + 4258 0.78 0.298164
Target:  5'- cCGAGCCAAAgguCAGCUUCacGCCCAGGc -3'
miRNA:   3'- -GCUCGGUUU---GUCGAGGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 10698 0.72 0.619949
Target:  5'- gGAGCCGGGCGGCUCg--GCUaAGGAg -3'
miRNA:   3'- gCUCGGUUUGUCGAGgaaCGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 12426 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 12534 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 13037 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 15495 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 15603 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 16106 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 18564 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 18672 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 19174 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 21633 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 21741 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 22243 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 24702 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 24810 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 25312 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 27771 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 27879 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.