miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 28381 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 30840 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 30947 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 31450 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 34016 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 34519 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 41406 0.7 0.750164
Target:  5'- uGAGCaagaauaaGGACGGCUCCUUauuaaccugaucaGCCCcGGAg -3'
miRNA:   3'- gCUCGg-------UUUGUCGAGGAA-------------CGGGuCCU- -5'
33323 3' -55.7 NC_007605.1 + 46863 0.8 0.258768
Target:  5'- uCGGGCCAGAgCGGC-CCUUGCCUGGGu -3'
miRNA:   3'- -GCUCGGUUU-GUCGaGGAACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 48348 0.66 0.912061
Target:  5'- uCGGGaCCGucacACAGCuuugugagUCCagGCCCGGGAc -3'
miRNA:   3'- -GCUC-GGUu---UGUCG--------AGGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 50699 0.66 0.905972
Target:  5'- aGGGCCGAaucuccGCGGCUUCUU-CCCGGc- -3'
miRNA:   3'- gCUCGGUU------UGUCGAGGAAcGGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 51465 0.67 0.864595
Target:  5'- aGAGCCcccucuuagagaAggUGGCcCCUggcagGCCCAGGGa -3'
miRNA:   3'- gCUCGG------------UuuGUCGaGGAa----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 53596 0.74 0.489799
Target:  5'- aGAGCCAAccuCAGCUCCUccaUGCCauccauGGAg -3'
miRNA:   3'- gCUCGGUUu--GUCGAGGA---ACGGgu----CCU- -5'
33323 3' -55.7 NC_007605.1 + 53813 0.67 0.8863
Target:  5'- aGGGCCAugAGCcGUUCCcggccgcUGCCCGGGc -3'
miRNA:   3'- gCUCGGU--UUGuCGAGGa------ACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 53844 0.71 0.681425
Target:  5'- uGAGCUAAcACGGCUCCUggaaGUCgAGGGc -3'
miRNA:   3'- gCUCGGUU-UGUCGAGGAa---CGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 54007 0.66 0.917911
Target:  5'- -cGGCCGggAACGGCUCaugGCCCuaccGGAa -3'
miRNA:   3'- gcUCGGU--UUGUCGAGgaaCGGGu---CCU- -5'
33323 3' -55.7 NC_007605.1 + 59017 0.67 0.89574
Target:  5'- -cGGCCAAacuuGCAGUgggCCUgguugcacgaggccgUGCCUAGGAu -3'
miRNA:   3'- gcUCGGUU----UGUCGa--GGA---------------ACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 59890 0.66 0.92889
Target:  5'- aGGGCCuuGCAGaugCuCUUGCCUAGa- -3'
miRNA:   3'- gCUCGGuuUGUCga-G-GAACGGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 61541 0.66 0.905972
Target:  5'- aCGGGCgAAGCGGCUCgUgggGCUCGcGGu -3'
miRNA:   3'- -GCUCGgUUUGUCGAGgAa--CGGGU-CCu -5'
33323 3' -55.7 NC_007605.1 + 61738 0.66 0.905972
Target:  5'- gCGAGCCccacGAGCcGCUUCgcccgugugGCCCGGGc -3'
miRNA:   3'- -GCUCGG----UUUGuCGAGGaa-------CGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 61941 0.71 0.671231
Target:  5'- gGAGCCGGGCGGCgUCaaaGgCCAGGAc -3'
miRNA:   3'- gCUCGGUUUGUCG-AGgaaCgGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.