miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 98621 0.66 0.923521
Target:  5'- gCGAGCCGGGCuuGC-CCUuuUGCacgguCAGGAu -3'
miRNA:   3'- -GCUCGGUUUGu-CGaGGA--ACGg----GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 98853 0.69 0.788848
Target:  5'- gCGAGgaCAAAguGgUUgUUGCCCAGGAa -3'
miRNA:   3'- -GCUCg-GUUUguCgAGgAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 99348 0.69 0.788848
Target:  5'- gGAGCC-GGCGGCcUCggaggUGCCCGGGu -3'
miRNA:   3'- gCUCGGuUUGUCGaGGa----ACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 100586 0.73 0.558782
Target:  5'- uCGAGgCGGACAGCUUCguggagGCCCAcGGGc -3'
miRNA:   3'- -GCUCgGUUUGUCGAGGaa----CGGGU-CCU- -5'
33323 3' -55.7 NC_007605.1 + 104131 0.66 0.92889
Target:  5'- gGAGCUgAAGCGcGCcccaUCCgaaGCCCGGGAc -3'
miRNA:   3'- gCUCGG-UUUGU-CG----AGGaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 104552 0.81 0.223728
Target:  5'- gGGGCCGGGCGcGCuccgUCCUUGUCCAGGAg -3'
miRNA:   3'- gCUCGGUUUGU-CG----AGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 105559 0.68 0.849062
Target:  5'- gCGAGCCGcgucguugcccuGACcGCgcgUCgagGCCCAGGAg -3'
miRNA:   3'- -GCUCGGU------------UUGuCGa--GGaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 110523 0.68 0.840995
Target:  5'- gGGGCgCAGACGGC-CCUUcGCCU-GGAu -3'
miRNA:   3'- gCUCG-GUUUGUCGaGGAA-CGGGuCCU- -5'
33323 3' -55.7 NC_007605.1 + 110669 0.71 0.701682
Target:  5'- aGGGCC-GGCAGCUCUaucgccucuaUUGCCagaGGGAa -3'
miRNA:   3'- gCUCGGuUUGUCGAGG----------AACGGg--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 111983 0.68 0.856931
Target:  5'- -uGGCaAAACAGCUCUgccugcUGCCuCAGGAa -3'
miRNA:   3'- gcUCGgUUUGUCGAGGa-----ACGG-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 115553 0.66 0.92889
Target:  5'- uGGGCCAcGCugggaguccGGCcCUUUGCCUGGGGc -3'
miRNA:   3'- gCUCGGUuUG---------UCGaGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 117599 0.67 0.879285
Target:  5'- uGAGgaaGAAguGUUCCagGCCCAGGAc -3'
miRNA:   3'- gCUCgg-UUUguCGAGGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 122275 0.74 0.489799
Target:  5'- -cGGCCAGAgCAGCUCUUUGCagaguaCCGGGAg -3'
miRNA:   3'- gcUCGGUUU-GUCGAGGAACG------GGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 126220 0.7 0.751131
Target:  5'- cCGcAGCgGAGaCAGCUCCUggUGCCCcacGGAc -3'
miRNA:   3'- -GC-UCGgUUU-GUCGAGGA--ACGGGu--CCU- -5'
33323 3' -55.7 NC_007605.1 + 129562 0.68 0.815676
Target:  5'- -cGGCCAAGC-GCUCCa-GCCCguAGGAu -3'
miRNA:   3'- gcUCGGUUUGuCGAGGaaCGGG--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 136690 0.66 0.899647
Target:  5'- -cGGCCGgggcGACcGCUCCggcCCCAGGAc -3'
miRNA:   3'- gcUCGGU----UUGuCGAGGaacGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 137262 0.67 0.877856
Target:  5'- -cGGCCAcACAGUgggcuucgggggCCUgugUGCCCGGGGg -3'
miRNA:   3'- gcUCGGUuUGUCGa-----------GGA---ACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 138929 0.68 0.849062
Target:  5'- cCGGGCCu--CAGC-CaucgGCCCGGGGg -3'
miRNA:   3'- -GCUCGGuuuGUCGaGgaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 144369 0.66 0.92889
Target:  5'- -uGGCCAAAaucCAGCuUCCgucCCCGGGAc -3'
miRNA:   3'- gcUCGGUUU---GUCG-AGGaacGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 148737 0.67 0.864595
Target:  5'- aGGGCgAAugGGCUgCagcaacGCCCAGGGa -3'
miRNA:   3'- gCUCGgUUugUCGAgGaa----CGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.