miRNA display CGI


Results 81 - 93 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 150810 0.67 0.879285
Target:  5'- gGAGcCCGGGCcGC-CCaccGCCCGGGAg -3'
miRNA:   3'- gCUC-GGUUUGuCGaGGaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 151307 0.68 0.815676
Target:  5'- aCGGGCCGccgaggGGCAgGCUgCggccGCCCAGGGg -3'
miRNA:   3'- -GCUCGGU------UUGU-CGAgGaa--CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 151560 0.66 0.92889
Target:  5'- aCGGGCUGGugGGCUCCcucugggaggUGCCCGc-- -3'
miRNA:   3'- -GCUCGGUUugUCGAGGa---------ACGGGUccu -5'
33323 3' -55.7 NC_007605.1 + 151664 0.66 0.92889
Target:  5'- aGGGCCAAACAgGCggCgggGCCUGGGu -3'
miRNA:   3'- gCUCGGUUUGU-CGagGaa-CGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 152500 0.71 0.688537
Target:  5'- aGAGCCAGacuggguggugucuGCAGCaaaagaggaaCUUGCCCAGGc -3'
miRNA:   3'- gCUCGGUU--------------UGUCGag--------GAACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 153766 0.66 0.92889
Target:  5'- gGGGCCAcaAACAgGCUCCggGUggugugggcggCCAGGGc -3'
miRNA:   3'- gCUCGGU--UUGU-CGAGGaaCG-----------GGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 154482 0.72 0.599444
Target:  5'- aGAGCaCAGGCuAGCcggCCUgcGCCCGGGAg -3'
miRNA:   3'- gCUCG-GUUUG-UCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 157841 0.73 0.568887
Target:  5'- uCGAGCUuccaAGAUAGCguguaagugcCCUUGUCCAGGAa -3'
miRNA:   3'- -GCUCGG----UUUGUCGa---------GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 159757 0.67 0.879285
Target:  5'- cCGAGCCAuGCAGCggUUggGCCgAGGc -3'
miRNA:   3'- -GCUCGGUuUGUCGa-GGaaCGGgUCCu -5'
33323 3' -55.7 NC_007605.1 + 159808 0.7 0.711727
Target:  5'- aGGGCCAGGCGacGCUCCcggGCaaaCAGGGc -3'
miRNA:   3'- gCUCGGUUUGU--CGAGGaa-CGg--GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 159908 0.67 0.893089
Target:  5'- gGGGCCAcggAGCGGCUCUUcUGCggCGGGGu -3'
miRNA:   3'- gCUCGGU---UUGUCGAGGA-ACGg-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 160791 0.66 0.923521
Target:  5'- -uGGCCAGACGGCgCUUgcgucUGCCCccGGAg -3'
miRNA:   3'- gcUCGGUUUGUCGaGGA-----ACGGGu-CCU- -5'
33323 3' -55.7 NC_007605.1 + 165964 0.66 0.917911
Target:  5'- uGGGCgG---AGUUCCUgagaGCCCAGGGg -3'
miRNA:   3'- gCUCGgUuugUCGAGGAa---CGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.