miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 80331 0.66 0.905972
Target:  5'- --uGCggaGAAUGGCUUCUcGCCCAGGGa -3'
miRNA:   3'- gcuCGg--UUUGUCGAGGAaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 75368 0.68 0.849062
Target:  5'- uGGGcCCAGAguGCUCCggcUGCCgcaccaCGGGAg -3'
miRNA:   3'- gCUC-GGUUUguCGAGGa--ACGG------GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 74593 0.68 0.849062
Target:  5'- gCGGGCUc--UGGCUCUUUggccgGCCCAGGAa -3'
miRNA:   3'- -GCUCGGuuuGUCGAGGAA-----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 73866 0.66 0.92889
Target:  5'- gGAGCCAAAgaccuccccCAGCUCg--GCCaGGGAc -3'
miRNA:   3'- gCUCGGUUU---------GUCGAGgaaCGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 73627 0.67 0.867602
Target:  5'- gCGGGCCuGGGCcgGGCUCaguguggacgugGCCCGGGAg -3'
miRNA:   3'- -GCUCGG-UUUG--UCGAGgaa---------CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 73256 0.66 0.917911
Target:  5'- uGAG-CGAGCAGCUCUUUGucuCCCGGc- -3'
miRNA:   3'- gCUCgGUUUGUCGAGGAAC---GGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 72387 0.74 0.528799
Target:  5'- cCGGGCCAAACuuaguucaGGUgugCCaUGCCCGGGGc -3'
miRNA:   3'- -GCUCGGUUUG--------UCGa--GGaACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 69840 0.75 0.480256
Target:  5'- uGAGaUAAACAGCacggUCUUGCCCAGGGg -3'
miRNA:   3'- gCUCgGUUUGUCGa---GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 69326 0.69 0.779609
Target:  5'- uCGAGCgGAgacGCAGCauuuUCUgcGCCCGGGGa -3'
miRNA:   3'- -GCUCGgUU---UGUCG----AGGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 68027 1.09 0.003155
Target:  5'- cCGAGCCAAACAGCUCCUUGCCCAGGAc -3'
miRNA:   3'- -GCUCGGUUUGUCGAGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 67375 0.7 0.751131
Target:  5'- aGuGCgAAACAGCUCCUggaUCCAGGu -3'
miRNA:   3'- gCuCGgUUUGUCGAGGAac-GGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 67267 0.66 0.905972
Target:  5'- gCGAGCCAuaaAGCAGUUUCUggagGCCaCGGc- -3'
miRNA:   3'- -GCUCGGU---UUGUCGAGGAa---CGG-GUCcu -5'
33323 3' -55.7 NC_007605.1 + 66274 0.72 0.609688
Target:  5'- -aGGCCAGcGCGGCUCUgucggUGCCgCGGGAg -3'
miRNA:   3'- gcUCGGUU-UGUCGAGGa----ACGG-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 61941 0.71 0.671231
Target:  5'- gGAGCCGGGCGGCgUCaaaGgCCAGGAc -3'
miRNA:   3'- gCUCGGUUUGUCG-AGgaaCgGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 61738 0.66 0.905972
Target:  5'- gCGAGCCccacGAGCcGCUUCgcccgugugGCCCGGGc -3'
miRNA:   3'- -GCUCGG----UUUGuCGAGGaa-------CGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 61541 0.66 0.905972
Target:  5'- aCGGGCgAAGCGGCUCgUgggGCUCGcGGu -3'
miRNA:   3'- -GCUCGgUUUGUCGAGgAa--CGGGU-CCu -5'
33323 3' -55.7 NC_007605.1 + 59890 0.66 0.92889
Target:  5'- aGGGCCuuGCAGaugCuCUUGCCUAGa- -3'
miRNA:   3'- gCUCGGuuUGUCga-G-GAACGGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 59017 0.67 0.89574
Target:  5'- -cGGCCAAacuuGCAGUgggCCUgguugcacgaggccgUGCCUAGGAu -3'
miRNA:   3'- gcUCGGUU----UGUCGa--GGA---------------ACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 54007 0.66 0.917911
Target:  5'- -cGGCCGggAACGGCUCaugGCCCuaccGGAa -3'
miRNA:   3'- gcUCGGU--UUGUCGAGgaaCGGGu---CCU- -5'
33323 3' -55.7 NC_007605.1 + 53844 0.71 0.681425
Target:  5'- uGAGCUAAcACGGCUCCUggaaGUCgAGGGc -3'
miRNA:   3'- gCUCGGUU-UGUCGAGGAa---CGGgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.