miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 74593 0.68 0.849062
Target:  5'- gCGGGCUc--UGGCUCUUUggccgGCCCAGGAa -3'
miRNA:   3'- -GCUCGGuuuGUCGAGGAA-----CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 30840 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 152500 0.71 0.688537
Target:  5'- aGAGCCAGacuggguggugucuGCAGCaaaagaggaaCUUGCCCAGGc -3'
miRNA:   3'- gCUCGGUU--------------UGUCGag--------GAACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 61941 0.71 0.671231
Target:  5'- gGAGCCGGGCGGCgUCaaaGgCCAGGAc -3'
miRNA:   3'- gCUCGGUUUGUCG-AGgaaCgGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 10698 0.72 0.619949
Target:  5'- gGAGCCGGGCGGCUCg--GCUaAGGAg -3'
miRNA:   3'- gCUCGGUUUGUCGAGgaaCGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 66274 0.72 0.609688
Target:  5'- -aGGCCAGcGCGGCUCUgucggUGCCgCGGGAg -3'
miRNA:   3'- gcUCGGUU-UGUCGAGGa----ACGG-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 157841 0.73 0.568887
Target:  5'- uCGAGCUuccaAGAUAGCguguaagugcCCUUGUCCAGGAa -3'
miRNA:   3'- -GCUCGG----UUUGUCGa---------GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 95578 0.73 0.538732
Target:  5'- gGGGCCAGguACAGgaCCUggaaaugGCCUAGGAg -3'
miRNA:   3'- gCUCGGUU--UGUCgaGGAa------CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 53596 0.74 0.489799
Target:  5'- aGAGCCAAccuCAGCUCCUccaUGCCauccauGGAg -3'
miRNA:   3'- gCUCGGUUu--GUCGAGGA---ACGGgu----CCU- -5'
33323 3' -55.7 NC_007605.1 + 46863 0.8 0.258768
Target:  5'- uCGGGCCAGAgCGGC-CCUUGCCUGGGu -3'
miRNA:   3'- -GCUCGGUUU-GUCGaGGAACGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 159808 0.7 0.711727
Target:  5'- aGGGCCAGGCGacGCUCCcggGCaaaCAGGGc -3'
miRNA:   3'- gCUCGGUUUGU--CGAGGaa-CGg--GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 41406 0.7 0.750164
Target:  5'- uGAGCaagaauaaGGACGGCUCCUUauuaaccugaucaGCCCcGGAg -3'
miRNA:   3'- gCUCGg-------UUUGUCGAGGAA-------------CGGGuCCU- -5'
33323 3' -55.7 NC_007605.1 + 27771 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 24702 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 21633 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 18564 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 15495 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 12426 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 129562 0.68 0.815676
Target:  5'- -cGGCCAAGC-GCUCCa-GCCCguAGGAu -3'
miRNA:   3'- gcUCGGUUUGuCGAGGaaCGGG--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 69326 0.69 0.779609
Target:  5'- uCGAGCgGAgacGCAGCauuuUCUgcGCCCGGGGa -3'
miRNA:   3'- -GCUCGgUU---UGUCG----AGGaaCGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.