miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 18564 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 15495 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 12426 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 129562 0.68 0.815676
Target:  5'- -cGGCCAAGC-GCUCCa-GCCCguAGGAu -3'
miRNA:   3'- gcUCGGUUUGuCGAGGaaCGGG--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 110669 0.71 0.701682
Target:  5'- aGGGCC-GGCAGCUCUaucgccucuaUUGCCagaGGGAa -3'
miRNA:   3'- gCUCGGuUUGUCGAGG----------AACGGg--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 34519 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 31450 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 28381 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 25312 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 22243 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 19174 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 53844 0.71 0.681425
Target:  5'- uGAGCUAAcACGGCUCCUggaaGUCgAGGGc -3'
miRNA:   3'- gCUCGGUU-UGUCGAGGAa---CGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 154482 0.72 0.599444
Target:  5'- aGAGCaCAGGCuAGCcggCCUgcGCCCGGGAg -3'
miRNA:   3'- gCUCG-GUUUG-UCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 3183 0.73 0.579037
Target:  5'- aGGGCCGucugcACGGCcgCCUUGCCCAuGAa -3'
miRNA:   3'- gCUCGGUu----UGUCGa-GGAACGGGUcCU- -5'
33323 3' -55.7 NC_007605.1 + 100586 0.73 0.558782
Target:  5'- uCGAGgCGGACAGCUUCguggagGCCCAcGGGc -3'
miRNA:   3'- -GCUCgGUUUGUCGAGGaa----CGGGU-CCU- -5'
33323 3' -55.7 NC_007605.1 + 72387 0.74 0.528799
Target:  5'- cCGGGCCAAACuuaguucaGGUgugCCaUGCCCGGGGc -3'
miRNA:   3'- -GCUCGGUUUG--------UCGa--GGaACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 122275 0.74 0.489799
Target:  5'- -cGGCCAGAgCAGCUCUUUGCagaguaCCGGGAg -3'
miRNA:   3'- gcUCGGUUU-GUCGAGGAACG------GGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 69840 0.75 0.480256
Target:  5'- uGAGaUAAACAGCacggUCUUGCCCAGGGg -3'
miRNA:   3'- gCUCgGUUUGUCGa---GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 4258 0.78 0.298164
Target:  5'- cCGAGCCAAAgguCAGCUUCacGCCCAGGc -3'
miRNA:   3'- -GCUCGGUUU---GUCGAGGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 151560 0.66 0.92889
Target:  5'- aCGGGCUGGugGGCUCCcucugggaggUGCCCGc-- -3'
miRNA:   3'- -GCUCGGUUugUCGAGGa---------ACGGGUccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.