miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 97395 0.69 0.797944
Target:  5'- gCGGGCCAGGuuGUgggCCggGUCCAGGGg -3'
miRNA:   3'- -GCUCGGUUUguCGa--GGaaCGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 126220 0.7 0.751131
Target:  5'- cCGcAGCgGAGaCAGCUCCUggUGCCCcacGGAc -3'
miRNA:   3'- -GC-UCGgUUU-GUCGAGGA--ACGGGu--CCU- -5'
33323 3' -55.7 NC_007605.1 + 34519 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 122275 0.74 0.489799
Target:  5'- -cGGCCAGAgCAGCUCUUUGCagaguaCCGGGAg -3'
miRNA:   3'- gcUCGGUUU-GUCGAGGAACG------GGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 88584 0.67 0.879285
Target:  5'- uGGGCC-GGCGGCUCCUgguauCCCuGGu -3'
miRNA:   3'- gCUCGGuUUGUCGAGGAac---GGGuCCu -5'
33323 3' -55.7 NC_007605.1 + 111983 0.68 0.856931
Target:  5'- -uGGCaAAACAGCUCUgccugcUGCCuCAGGAa -3'
miRNA:   3'- gcUCGgUUUGUCGAGGa-----ACGG-GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 13037 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 69840 0.75 0.480256
Target:  5'- uGAGaUAAACAGCacggUCUUGCCCAGGGg -3'
miRNA:   3'- gCUCgGUUUGUCGa---GGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 138929 0.68 0.849062
Target:  5'- cCGGGCCu--CAGC-CaucgGCCCGGGGg -3'
miRNA:   3'- -GCUCGGuuuGUCGaGgaa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 4258 0.78 0.298164
Target:  5'- cCGAGCCAAAgguCAGCUUCacGCCCAGGc -3'
miRNA:   3'- -GCUCGGUUU---GUCGAGGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 67375 0.7 0.751131
Target:  5'- aGuGCgAAACAGCUCCUggaUCCAGGu -3'
miRNA:   3'- gCuCGgUUUGUCGAGGAac-GGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 151307 0.68 0.815676
Target:  5'- aCGGGCCGccgaggGGCAgGCUgCggccGCCCAGGGg -3'
miRNA:   3'- -GCUCGGU------UUGU-CGAgGaa--CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 22243 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 31450 0.7 0.711727
Target:  5'- gCGGGcCCGAGgGGCUCUggggUGCCCgAGGu -3'
miRNA:   3'- -GCUC-GGUUUgUCGAGGa---ACGGG-UCCu -5'
33323 3' -55.7 NC_007605.1 + 154482 0.72 0.599444
Target:  5'- aGAGCaCAGGCuAGCcggCCUgcGCCCGGGAg -3'
miRNA:   3'- gCUCG-GUUUG-UCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 72387 0.74 0.528799
Target:  5'- cCGGGCCAAACuuaguucaGGUgugCCaUGCCCGGGGc -3'
miRNA:   3'- -GCUCGGUUUG--------UCGa--GGaACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 136690 0.66 0.899647
Target:  5'- -cGGCCGgggcGACcGCUCCggcCCCAGGAc -3'
miRNA:   3'- gcUCGGU----UUGuCGAGGaacGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 88506 0.67 0.879285
Target:  5'- gGGGCC-GGCGGCUCCUgguauCCCuGGu -3'
miRNA:   3'- gCUCGGuUUGUCGAGGAac---GGGuCCu -5'
33323 3' -55.7 NC_007605.1 + 137262 0.67 0.877856
Target:  5'- -cGGCCAcACAGUgggcuucgggggCCUgugUGCCCGGGGg -3'
miRNA:   3'- gcUCGGUuUGUCGa-----------GGA---ACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 148737 0.67 0.864595
Target:  5'- aGGGCgAAugGGCUgCagcaacGCCCAGGGa -3'
miRNA:   3'- gCUCGgUUugUCGAgGaa----CGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.