miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33323 3' -55.7 NC_007605.1 + 73256 0.66 0.917911
Target:  5'- uGAG-CGAGCAGCUCUUUGucuCCCGGc- -3'
miRNA:   3'- gCUCgGUUUGUCGAGGAAC---GGGUCcu -5'
33323 3' -55.7 NC_007605.1 + 67375 0.7 0.751131
Target:  5'- aGuGCgAAACAGCUCCUggaUCCAGGu -3'
miRNA:   3'- gCuCGgUUUGUCGAGGAac-GGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 144369 0.66 0.92889
Target:  5'- -uGGCCAAAaucCAGCuUCCgucCCCGGGAc -3'
miRNA:   3'- gcUCGGUUU---GUCG-AGGaacGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 126220 0.7 0.751131
Target:  5'- cCGcAGCgGAGaCAGCUCCUggUGCCCcacGGAc -3'
miRNA:   3'- -GC-UCGgUUU-GUCGAGGA--ACGGGu--CCU- -5'
33323 3' -55.7 NC_007605.1 + 88584 0.67 0.879285
Target:  5'- uGGGCC-GGCGGCUCCUgguauCCCuGGu -3'
miRNA:   3'- gCUCGGuUUGUCGAGGAac---GGGuCCu -5'
33323 3' -55.7 NC_007605.1 + 88506 0.67 0.879285
Target:  5'- gGGGCC-GGCGGCUCCUgguauCCCuGGu -3'
miRNA:   3'- gCUCGGuUUGUCGAGGAac---GGGuCCu -5'
33323 3' -55.7 NC_007605.1 + 115553 0.66 0.92889
Target:  5'- uGGGCCAcGCugggaguccGGCcCUUUGCCUGGGGc -3'
miRNA:   3'- gCUCGGUuUG---------UCGaGGAACGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 159757 0.67 0.879285
Target:  5'- cCGAGCCAuGCAGCggUUggGCCgAGGc -3'
miRNA:   3'- -GCUCGGUuUGUCGa-GGaaCGGgUCCu -5'
33323 3' -55.7 NC_007605.1 + 98621 0.66 0.923521
Target:  5'- gCGAGCCGGGCuuGC-CCUuuUGCacgguCAGGAu -3'
miRNA:   3'- -GCUCGGUUUGu-CGaGGA--ACGg----GUCCU- -5'
33323 3' -55.7 NC_007605.1 + 10698 0.72 0.619949
Target:  5'- gGAGCCGGGCGGCUCg--GCUaAGGAg -3'
miRNA:   3'- gCUCGGUUUGUCGAGgaaCGGgUCCU- -5'
33323 3' -55.7 NC_007605.1 + 84726 0.67 0.872048
Target:  5'- aGAGCCGGuucaugauCAGCUaCUgccUGcCCCAGGAc -3'
miRNA:   3'- gCUCGGUUu-------GUCGA-GGa--AC-GGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 129562 0.68 0.815676
Target:  5'- -cGGCCAAGC-GCUCCa-GCCCguAGGAu -3'
miRNA:   3'- gcUCGGUUUGuCGAGGaaCGGG--UCCU- -5'
33323 3' -55.7 NC_007605.1 + 30947 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 27879 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 24810 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 21741 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 18672 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 15603 0.67 0.872048
Target:  5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3'
miRNA:   3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5'
33323 3' -55.7 NC_007605.1 + 15495 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5'
33323 3' -55.7 NC_007605.1 + 12426 0.68 0.8319
Target:  5'- gGGGCCGGuCGGCUgggcuggCCgaGCCCGGGu -3'
miRNA:   3'- gCUCGGUUuGUCGA-------GGaaCGGGUCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.