Results 81 - 93 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33323 | 3' | -55.7 | NC_007605.1 | + | 153766 | 0.66 | 0.92889 |
Target: 5'- gGGGCCAcaAACAgGCUCCggGUggugugggcggCCAGGGc -3' miRNA: 3'- gCUCGGU--UUGU-CGAGGaaCG-----------GGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 87806 | 0.66 | 0.899647 |
Target: 5'- gGGGCCuccuGCcgcggGGCUCC-UGCCgCGGGGc -3' miRNA: 3'- gCUCGGuu--UG-----UCGAGGaACGG-GUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 59017 | 0.67 | 0.89574 |
Target: 5'- -cGGCCAAacuuGCAGUgggCCUgguugcacgaggccgUGCCUAGGAu -3' miRNA: 3'- gcUCGGUU----UGUCGa--GGA---------------ACGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 15603 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 18672 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 21741 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 24810 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 27879 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 30947 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 34016 | 0.67 | 0.872048 |
Target: 5'- gGAGgCAGAgGGUcggCCUagGCCCGGGGa -3' miRNA: 3'- gCUCgGUUUgUCGa--GGAa-CGGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 84726 | 0.67 | 0.872048 |
Target: 5'- aGAGCCGGuucaugauCAGCUaCUgccUGcCCCAGGAc -3' miRNA: 3'- gCUCGGUUu-------GUCGA-GGa--AC-GGGUCCU- -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 53813 | 0.67 | 0.8863 |
Target: 5'- aGGGCCAugAGCcGUUCCcggccgcUGCCCGGGc -3' miRNA: 3'- gCUCGGU--UUGuCGAGGa------ACGGGUCCu -5' |
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33323 | 3' | -55.7 | NC_007605.1 | + | 104131 | 0.66 | 0.92889 |
Target: 5'- gGAGCUgAAGCGcGCcccaUCCgaaGCCCGGGAc -3' miRNA: 3'- gCUCGG-UUUGU-CG----AGGaa-CGGGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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