Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33324 | 5' | -57.8 | NC_007605.1 | + | 30878 | 0.66 | 0.830776 |
Target: 5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3' miRNA: 3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 144085 | 0.66 | 0.859271 |
Target: 5'- -gGGUgCUGGGGUGGGGgaugggcuCAGGCaa-CCg -3' miRNA: 3'- caUCA-GAUCCCACUCC--------GUCCGgagGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 91593 | 0.66 | 0.86674 |
Target: 5'- gGUGGgCUuugaGGGGUGGGGgaauaUGGGUCUCUCa -3' miRNA: 3'- -CAUCaGA----UCCCACUCC-----GUCCGGAGGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 14024 | 0.66 | 0.859271 |
Target: 5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3' miRNA: 3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 26299 | 0.66 | 0.859271 |
Target: 5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3' miRNA: 3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 45151 | 0.66 | 0.843741 |
Target: 5'- uUAGUCcaaacaUGGGGgccagGAGGCAGGgg-CCCu -3' miRNA: 3'- cAUCAG------AUCCCa----CUCCGUCCggaGGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 105878 | 0.66 | 0.843741 |
Target: 5'- uGUGGgac-GGGcGAGGCcGGCCUUCUg -3' miRNA: 3'- -CAUCagauCCCaCUCCGuCCGGAGGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 33946 | 0.66 | 0.830776 |
Target: 5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3' miRNA: 3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 12464 | 0.66 | 0.830776 |
Target: 5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3' miRNA: 3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 15475 | 0.67 | 0.810496 |
Target: 5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3' miRNA: 3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 33995 | 0.67 | 0.818213 |
Target: 5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3' miRNA: 3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 18476 | 0.67 | 0.774739 |
Target: 5'- -aGGUaCUGGGuGcaggGGGGCAGGCggCCCu -3' miRNA: 3'- caUCA-GAUCC-Ca---CUCCGUCCGgaGGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 21613 | 0.67 | 0.810496 |
Target: 5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3' miRNA: 3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 18544 | 0.67 | 0.810496 |
Target: 5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3' miRNA: 3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 27683 | 0.67 | 0.774739 |
Target: 5'- -aGGUaCUGGGuGcaggGGGGCAGGCggCCCu -3' miRNA: 3'- caUCA-GAUCC-Ca---CUCCGUCCGgaGGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 21545 | 0.67 | 0.774739 |
Target: 5'- -aGGUaCUGGGuGcaggGGGGCAGGCggCCCu -3' miRNA: 3'- caUCA-GAUCC-Ca---CUCCGUCCGgaGGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 18651 | 0.67 | 0.818213 |
Target: 5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3' miRNA: 3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 21720 | 0.67 | 0.818213 |
Target: 5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3' miRNA: 3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 24789 | 0.67 | 0.818213 |
Target: 5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3' miRNA: 3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5' |
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33324 | 5' | -57.8 | NC_007605.1 | + | 27858 | 0.67 | 0.818213 |
Target: 5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3' miRNA: 3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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